RNA id: TU503895


Basic Information

Item Value
RNA id TU503895
length 2682
lncRNA type antisense_over
GC content 0.51
exon number 23
gene id G439054
representative False

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 426712 ~ 490523 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGCGAATGTATCCGGTACGTAGTCTTTCACCTCGATATACACGAATATAGCAGGAAGAATTAGAGCTTGATTCTTTTCATTTCTCAAACCGATGTAACGATAACCCGGACGAATGGCTGAGACGGGAATGATCCGATGACCAATGAACTTCCCTCCTTCTTCAAACACGGCTATCCTGAGGGAAGCGAGGGTGGGCAACACAACTTTTTTAAAGACGATGGGCTCCTCGTCCCACACAGGATTGATGGCGTTGCTTTGGGACGTCTTTGTCTTGAAAGCTTTTCGTCTCGTGTCAACTGGAAGTCCAAACATGTCAATCTCCACATAAACGCCCACCTTCTTGTCAGTCAGAAACTGTCCTGATATGATCTTTACTGATAAGGTATTGGCTACAATCCCATCCACTGTGCTTTCTGTGAAGGGGTCGAAATGCTTGTCCGGTCGCCTCATGAACTCTGGTTTGAGCCTGTAGCCACTTTTCCCGTTGTACTCGTACATGCCGAGGTTCAGCTGCATGGACAGATCGATGGTCTGAAAGTTGAGTGCTACAAGCTGACAGCCGGCGTTCCAGAACACCTGCGGCATGTAGTTGGAGGAATCCACCCGAGTTCCTTTGGGATAGATTCTGCTCAGCTGAAATTTGTTGTATTCTACAAACTCCACCGGTGTCTTCGTGAGCTGCTCCAGGGCTTTGGTCTCCACAAACGATGACATCTGATAACTGCGCTTGGTTTTCTTGGAAACCTCAAAGGAGTGGAACTTGGTCGGCTGGATGTAATTGACCAGCGTGGACATTTCTTCTGTGGCAAAGGCTTCAGATCCTGCTGTACCCTCGTCTGACTTCTTACAGTCGTCATCGTCATCATCTTCATCCTCGTCATCCTCAGCCTCCACCTCTGCAGGCGCTGCAGGTCCAGCGCTGGGTGACGAAGGCTCAAACACGCTGGACGAGTCGCTGTTGGTGTTGGACACCTGCTCGGACAGCTTCTTCTTCGTGCTCCCGTCAGATGGTTTCGGGTGAGATTTCTTGTTCTTGATGAGGATCTTTCCCATGAGCTCTTGAGGGCTTGGCAGAGGAACTCCAGACTCGAGAGGATATTTCTCAAGCGGCTCAGTCAGAAGTGCGTCCCCGAATATCGATCTGCAATATTCTGCCATTTTGGCTTGCTGTTTGGGGGAGTCCACATGATTCTCAAAGGACAGGATGACGGGGAAAGGAGACGTTTTGAAAGCGCACTCCGCTATAGCTTCGATCACTTCCTTGAAGGAGATTTCTGAGGTCATGGTGAAGCCGTGTGTGATGACGGGTTCCTCCTCCGCCGTACGCCCCTTCCAGCAGTCCAGCTCCACACAGCGGCAGCCAGACAGCAGCGTCTGCCGATACATCTCCACCGAGGAGTTACCCGCAAGCTGACCCGCTGTGAGGTAGGTGTTGTGGGAGGAGTTGATGAAGTAATGAGAGAGAGGGAAGGTCATGTCTTCACTCTGGTCCAGTTTTTCTGCAGGAATGACGCTGTTCTCTTGACTGATCAGATACCTGGAGAAGCCCTCGACTGAGATCTGCCCTTTTTGAATCATTCCTGGGTTGGGCTCAAATTTCTCCATGAGGCTCTGGGTTTGTTCAGGCTTCAGCGGCGGGTACAAGATCTCGTTCAGACGAGGGTCCCGCTGTTTGTTGTTTATGAATTCCGTCATCTGATCCAGGGTGAGAAAGTTTCTGCCCTTCGCGCCAAGATCAGCAAATATTTGGTTAATCTCAGATCGTGGGCAGAGATGGCTGATGAACGATTTGTAAACGTCAGGGGTCAAATCCTCCAAAGGAATGGAGTCATTCCGGCCGGACGGAAGATTACAGCTCTCCAGTGCCGTTTCCACGCGCTTCCGGTCAGTTGAGAAAATGCGGAATATGTTTTTCACAGGGATGCGACCCTCTTGATTGGTCTGCAGCTTGAGTCTCGTGAAGGCTTTCTCCAGACAGGATTCTCTGCCCATGTTCTGAGCGAGTAGGTTGGATGCCAGACTAAACAGCTCATCTGCCCACTCCTTGGCGACTTCTTCTTGGAAGGCCATGAAGTTCAGGTACTGGATATTGACCATGTCAGGTCCCGTCACCACCGTCAGCATCCGGTTCTCTATCCGTCCCACCAGATTACCCACATCCAGGAGCTCCCGGAGCTTTGCTTCCTTTGGCGTTTTGGTGCATTTCCCTGTTCTTGCATCTTTGATGTAGGTGATGTCCAATAGGTCTGTTTCCTTATTCTGATCCGTCCAGTACAGGAAGTATCCCTGCGGATCGACGCGTAACGTCACTGGAGTCACAGTAGAAGAATCCTCATCCCATTTCATAAATCTACTGCCTCGCTTCAGACTCTCGGACACGCGCACCGGCTTGAGTTGAAGCGCATGAACGCCAGGTTGAGCTCCAGCCATTCAAGCTTCAACATTTACACCCAAAACAGCTGTGGGGAGAAAAAAATCAAGTCTCTCTCTTTTTTCTCCGGGAAGAAGCCAAAGCGGAGCGCACAGGATGACAGCGAAACAGTTCTGAACGCAAGGAGTGATCGAAGACGCGGAGCAAATGAGCAGCGGGGAGAAACAGCGATCATAAATGATGGAGAGAGTGAGTGAGTGAGCGAGCGAGCGAGCGCGTGTCCTCCGCGCACTGACTCATGTGCGCGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU503892 lncRNA upstream 7695 416616 ~ 419017 (+) True G439052
TU503720 lncRNA upstream 175573 242153 ~ 251139 (+) True CI01000310_00215248_00279025
TU503735 lncRNA upstream 195343 229796 ~ 231369 (+) True G438913
TU503717 lncRNA upstream 197415 193049 ~ 217248 (+) True G438896
TU503701 lncRNA upstream 292322 134062 ~ 134390 (+) True G438881
TU503917 lncRNA downstream 8250 498773 ~ 500118 (+) True G439072
TU503975 lncRNA downstream 119913 610436 ~ 610741 (+) True G439111
TU504010 lncRNA downstream 209092 699615 ~ 699921 (+) True G439135
TU504016 lncRNA downstream 213125 703648 ~ 748971 (+) True G439141
TU504009 lncRNA downstream 224991 715514 ~ 746104 (+) True G439134
CI01000310_00298547_00317035.mRNA mRNA upstream 108357 298547 ~ 318355 (+) True CI01000310_00298547_00317035
CI01000310_00215248_00279025.mRNA mRNA upstream 147064 215248 ~ 279648 (+) False CI01000310_00215248_00279025
CI01000310_00138858_00147748.mRNA mRNA upstream 278957 138547 ~ 147755 (+) True CI01000310_00138858_00147748
CI01000310_00003244_00012743.mRNA mRNA upstream 413798 3244 ~ 12914 (+) True CI01000310_00003244_00012743
CI01000310_00495852_00504711.mRNA mRNA downstream 5329 495852 ~ 504711 (+) True CI01000310_00495852_00504711
CI01000310_00513998_00524767.mRNA mRNA downstream 23475 513998 ~ 525606 (+) True CI01000310_00513998_00524767
CI01000310_00629492_00629967.mRNA mRNA downstream 138969 629492 ~ 630832 (+) True CI01000310_00629492_00629967
CI01000310_00648731_00650082.mRNA mRNA downstream 158208 648731 ~ 650119 (+) False CI01000310_00648731_00650082
CI01000310_00653504_00679039.mRNA mRNA downstream 162981 653504 ~ 679039 (+) False CI01000310_00653504_00679039
TU504002 other downstream 158043 648566 ~ 649553 (+) False CI01000310_00648731_00650082
TU503981 other downstream 159435 651976 ~ 653356 (+) False G439115
TU503984 other downstream 159435 651976 ~ 653337 (+) True G439115
TU503983 other downstream 159469 651976 ~ 653356 (+) True G439115
TU504536 other downstream 731483 1222006 ~ 1239405 (+) True G439538

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00023426 False 3021 mRNA 0.49 27 NC_007128.7 3841012 ~ 3986236 (-)
bowfin (Amia calva) AMCG00004228 True 3180 mRNA 0.45 28 CM030121.1 39249462 ~ 39293233 (+)