RNA id: TU503975


Basic Information

Item Value
RNA id TU503975
length 306
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G439111
representative True

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 610436 ~ 610741 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TACATTGTTCAAATCGGAGTCGACACTGATGGAGAGACTCAGGAAGAAGTTACAACTTTTAGAATGAAACTGGACGTTTCTGAATGGTTAGTGGACAAATTTATGTAGTTGCTGTGGAGTTGATTCAACTCATCGACTAACATGTGCTGTCATGTTAATCTTTTTTCATTGAATTGACCCTCGTTTGTGAAGCAGTCCAGTGTAAAATGACGGCATGGCAACAACACTCTACTACAACAACTCTTCCTCTTCTCTAAAGCAGCCCAACATGGCCTCACCACCTTTGTTGTGTGTTCTTGGGGGCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU503917 lncRNA upstream 110318 498773 ~ 500118 (+) True G439072
TU503895 lncRNA upstream 119913 426712 ~ 490523 (+) False G439054
TU503894 lncRNA upstream 119913 489626 ~ 490523 (+) True G439054
TU503897 lncRNA upstream 168656 440834 ~ 441780 (+) False G439054
TU503892 lncRNA upstream 191419 416616 ~ 419017 (+) True G439052
TU504010 lncRNA downstream 88874 699615 ~ 699921 (+) True G439135
TU504016 lncRNA downstream 92907 703648 ~ 748971 (+) True G439141
TU504009 lncRNA downstream 104773 715514 ~ 746104 (+) True G439134
TU504013 lncRNA downstream 141529 752270 ~ 752679 (+) True G439138
TU504029 lncRNA downstream 145598 756339 ~ 756796 (+) True G439148
CI01000310_00513998_00524767.mRNA mRNA upstream 84830 513998 ~ 525606 (+) True CI01000310_00513998_00524767
CI01000310_00495852_00504711.mRNA mRNA upstream 105725 495852 ~ 504711 (+) True CI01000310_00495852_00504711
CI01000310_00298547_00317035.mRNA mRNA upstream 292081 298547 ~ 318355 (+) True CI01000310_00298547_00317035
CI01000310_00215248_00279025.mRNA mRNA upstream 330788 215248 ~ 279648 (+) False CI01000310_00215248_00279025
CI01000310_00138858_00147748.mRNA mRNA upstream 462681 138547 ~ 147755 (+) True CI01000310_00138858_00147748
CI01000310_00629492_00629967.mRNA mRNA downstream 18751 629492 ~ 630832 (+) True CI01000310_00629492_00629967
CI01000310_00648731_00650082.mRNA mRNA downstream 37990 648731 ~ 650119 (+) False CI01000310_00648731_00650082
CI01000310_00653504_00679039.mRNA mRNA downstream 42763 653504 ~ 679039 (+) False CI01000310_00653504_00679039
CI01000310_00691123_00696889.mRNA mRNA downstream 80382 691123 ~ 697281 (+) False CI01000310_00691123_00696889
CI01000310_00717405_00718485.mRNA mRNA downstream 106664 717405 ~ 718563 (+) True CI01000310_00717405_00718485
TU504002 other downstream 37825 648566 ~ 649553 (+) False CI01000310_00648731_00650082
TU503981 other downstream 39217 651976 ~ 653356 (+) False G439115
TU503984 other downstream 39217 651976 ~ 653337 (+) True G439115
TU503983 other downstream 39251 651976 ~ 653356 (+) True G439115
TU504536 other downstream 611265 1222006 ~ 1239405 (+) True G439538

Expression Profile