RNA id: TCONS_00019934


Basic Information

Item Value
RNA id TCONS_00019934
length 2087
RNA type mRNA
GC content 0.39
exon number 9
gene id XLOC_010016
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 29650698 ~ 29684858 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGCTGCTGTCTCTGGGCGAGCTGTGTGAATTGAGAGAAGCACCGAGCAGCAAGTATGTCTAAGAGTGATCCCAGAGACATTGATGAGGATGCCATCCTCAGGGGCCTCAGCGCAGAGGAGCTGGAGCAGCTGGACATTGAGCTGCAGGAGCTGGACCCTGAGAACACTACTCTGCCTGCCGGGTTTCGCCAGCGTGACCAGACCAAGAAGAGTCCCACAGGTCCCTTTGATCGCTTCGCCCTCATGGATTACCTGGAGAAACAAGCCATAGAGCATAAGGATAGAGATGACCTGGTGCCTTTTACAGGGGAGAAGAGAGGGAAAGCCTTCGTTCCTAAACCAGGCTCGGGACAAATCCCAGCGGACGAGCAGATCACTCTGGAACCTGAGCTGGAGGAAGCGCTAAGAAACGCAACAGATGCTGAAATGTGTGACATTGCAGCCATCTTGGGAATGTACACACTCATGAGCAACAAGCAATATTATGATGCCCTGAACACCACCGGCAAGATTGCCAACACAGAAGGCATCAACAGTGTGGTGAAACCAGATGTGTATAAAATCTATCCTGAGGAGCCTCCCAATGACACCAACGTGGAGGAAACTCTCCGCTACATCCAGAAAAATGACAACAGGCTGCAGGAGGTCAACCTCAACAACATCCCGGACATTCCCATCCCAACCCTAAAGGAGATTTTTGAGGCTATGAAGCGTAACACACACGTGTTGTGCCTGAGCATCGCCGGGACACGCAGTAATGACCCCGTGGCCTACGCCATAGCTGAGATGTTACAGGCCAACAAGAACCTGCAGAGCCTAAACATTGAGTCCAACTTCATCACTGCACAGGGCATGATGGCTATCGTCAAAGCCCTCAGAAAAAACTCCACCCTGATTGAGATCAAGATCGACAACCAAAGACAGAAACTTGGCGACTCAGTTGAGATGGAGATTGCATCCATGTTGGAGAAAAATTCCAGCATCATTAAGATTGGGTACCACTTCACTCAGCAGGGCCCGCGTGCCAGAGCCGCCATGGCCATCACTAGAAACAATGACATCCTTCGTCAGCAGAGAGTAAGATGAGCAGAAGATGGAGATcaacatcatcatcctcatcatcactgTTCTCCTATAAACACTCCAGTAACAGCCAGGGCAACTGAAATGCCTTTAGCATTCACCCTCAGCCATTGTGGATATCATTACCACCAGCTTCATAAGACTTTGTTACTTTTTATGAGTTGACTTTCATAAAATCTAAATCTCTGATCTAATAAAATTGACCTGCTCTTTAATACCTCAGTTTGCAAACTTGAACAAGATGCTAGATAGTTCATTTTCTGGTAATATGGTGCTTCCacacacatttcttttttttgtgtaaatatttgaaataaaatactaCATTCTATATTGTCTAATAAGACTTcaaagttttattaaattacaaaatcatTTGATTTAGATTCAATCACATGCTATtgatatttttataaacatttttgagAAGTTAATATTAGAATTCAACAGGATGAATCTAACTTTTTTTTAGACACTGTAGAATAACGGTTAACCATTAGttgatgttaatgtatttacaaacatttgCTAATACATttgttatgtattttataatctttgttaatgttagttaccgttatttaagttaaataatgttagttcGTGTTTACTtatgatgcattaactaatgttgacaagcacaactttgatttaattatgcattagtaaatgttaaactatgattaaaaaatgttattattattcatactaagctaatgttagtaaatacaataactaatatTACCTAATAGACCATTATTCTAATgtattaccatttttttttacattgatcaagcaaaaatgtcattaaaagattttttaaaaactttgttcTTAAGACAcacgttttaaatttttttttacaaactattaCATAAAGAAACtatccataataaaaaaaaactttcattttataatatatacaagATATAAGGAATGGTAActatatcagtaaaaaatattatatgtaaattaatatttagaatgattaatttagtttatt

Function

GO:

id name namespace
GO:0051694 pointed-end actin filament capping biological_process
GO:0006936 muscle contraction biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0007015 actin filament organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0005523 tropomyosin binding molecular_function
GO:0051015 actin filament binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-991019-9 Predicted to enable tropomyosin binding activity. Acts upstream of or within skeletal myofibril assembly. Predicted to be active in striated muscle thin filament. Is expressed in head muscle and myotome. Orthologous to human TMOD4 (tropomodulin 4).

Ensembl:

ensembl_id ENSDART00000191336

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021963 lncRNA upstream 63141 29591119 ~ 29600668 (+) True XLOC_010014
TCONS_00019922 lncRNA upstream 146271 29514496 ~ 29517538 (+) False XLOC_010011
TCONS_00019920 lncRNA upstream 151404 29509138 ~ 29512405 (+) True XLOC_010010
TCONS_00021962 lncRNA upstream 412961 29245880 ~ 29250848 (+) True XLOC_010006
TCONS_00021961 lncRNA upstream 432962 29212450 ~ 29230847 (+) False XLOC_010005
TCONS_00021721 lncRNA downstream 36769 29721627 ~ 29730138 (+) False XLOC_010018
TCONS_00021722 lncRNA downstream 36805 29721663 ~ 29808897 (+) False XLOC_010018
TCONS_00021723 lncRNA downstream 36805 29721663 ~ 29813252 (+) False XLOC_010018
TCONS_00021724 lncRNA downstream 45125 29729983 ~ 29738428 (+) True XLOC_010018
TCONS_00019936 lncRNA downstream 218786 29903644 ~ 29908970 (+) True XLOC_010019
TCONS_00019931 mRNA upstream 16071 29630965 ~ 29647738 (+) False XLOC_010015
TCONS_00019930 mRNA upstream 16071 29630965 ~ 29647738 (+) False XLOC_010015
TCONS_00019929 mRNA upstream 16071 29630965 ~ 29647738 (+) False XLOC_010015
TCONS_00019932 mRNA upstream 16071 29641571 ~ 29647738 (+) True XLOC_010015
TCONS_00019928 mRNA upstream 18883 29630965 ~ 29644926 (+) False XLOC_010015
TCONS_00019935 mRNA downstream 5850 29690708 ~ 29696789 (+) True XLOC_010017
TCONS_00019937 mRNA downstream 317747 30002605 ~ 30271444 (+) False XLOC_010020
TCONS_00019940 mRNA downstream 432940 30117798 ~ 30245831 (+) False XLOC_010020
TCONS_00019941 mRNA downstream 433013 30117871 ~ 30267666 (+) True XLOC_010020
TCONS_00019942 mRNA downstream 616681 30301539 ~ 30306358 (+) True XLOC_010022
TCONS_00019912 other upstream 447449 29216274 ~ 29216360 (+) True XLOC_010005
TCONS_00019905 other upstream 644671 29016936 ~ 29019138 (+) True XLOC_010002
TCONS_00019885 other upstream 1275646 28388046 ~ 28388163 (+) True XLOC_009989
TCONS_00019873 other upstream 2108569 27549842 ~ 27555240 (+) False XLOC_009979
TCONS_00019870 other upstream 2113453 27543588 ~ 27550356 (+) False XLOC_009979
TCONS_00019938 other downstream 317894 30002752 ~ 30036693 (+) False XLOC_010020
TCONS_00019939 other downstream 395685 30080543 ~ 30080661 (+) True XLOC_010021
TCONS_00019951 other downstream 1285643 30970501 ~ 30971157 (+) True XLOC_010029
TCONS_00019955 other downstream 1949612 31634470 ~ 31634595 (+) True XLOC_010035
TCONS_00019961 other downstream 2144180 31829038 ~ 31836487 (+) True XLOC_010037

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_08064283_08072145.mRNA True 3909 mRNA 0.39 9 CI01000027 8061684 ~ 8072249 (+)