RNA id: TCONS_00019936



Basic Information


Item Value
RNA id TCONS_00019936
length 475
lncRNA type lincRNA
GC content 0.42
exon number 2
gene id XLOC_010019
representative True

Chromosome Information


Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 29903644 ~ 29908970 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CGATTATTGTCTCTATGCTTTAAATCCCCTGGTTAGTATTCAGGAAGGCGGCTTTAGCTCAGTGTGAAATATTGAATTTCTGTGCCCCGGCAGTTCTGCATGTGATAAAAGTGCTGCTAAACTCTGTGGTATTGCCTCCCTCCTCTCAAAATACACCCAGCTTCAGAAAACCTGTTGTATGTGAACAGAAATGGCGACAGGGGACGAGCCTGAGGAACAGACGAATGCATTACACGCCACACAAGACAAGGGCGTTTTTACCGTGCAGTGGGGAAATTACATTAGTTGGATGCCTAAGAAGTCTTCCCTGTTATTGGATTTCTGTTTGTGCTTTGACTACTCTTTAAGGCTACTCTTTAAGGCTATGTCCATACAAAAATTGGTATTTTCAAAACCACAGTTGTTTCTATGCAGTTTGGCCATTTGTCCAGAAATAAACGCAGTATCAGGTGACTGAAATCAAAACTCTAAAAAC

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000154767

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00021723 lncRNA upstream 90392 29721663 ~ 29813252 (+) False XLOC_010018
TCONS_00021722 lncRNA upstream 94747 29721663 ~ 29808897 (+) False XLOC_010018
TCONS_00021724 lncRNA upstream 165216 29729983 ~ 29738428 (+) True XLOC_010018
TCONS_00021721 lncRNA upstream 173506 29721627 ~ 29730138 (+) False XLOC_010018
TCONS_00021963 lncRNA upstream 302976 29591119 ~ 29600668 (+) True XLOC_010014
TCONS_00021964 lncRNA downstream 93782 30002752 ~ 30039724 (+) False XLOC_010020
TCONS_00021965 lncRNA downstream 93782 30002752 ~ 30117984 (+) False XLOC_010020
TCONS_00021966 lncRNA downstream 420893 30329863 ~ 30330881 (+) False XLOC_010024
TCONS_00021967 lncRNA downstream 421310 30330280 ~ 30330881 (+) True XLOC_010024
TCONS_00021968 lncRNA downstream 1182028 31090998 ~ 31094580 (+) True XLOC_010030
TCONS_00019935 mRNA upstream 206855 29690708 ~ 29696789 (+) True XLOC_010017
TCONS_00019934 mRNA upstream 218786 29663809 ~ 29684858 (+) True XLOC_010016
TCONS_00019933 mRNA upstream 219451 29650698 ~ 29684193 (+) False XLOC_010016
TCONS_00019929 mRNA upstream 255906 29630965 ~ 29647738 (+) False XLOC_010015
TCONS_00019937 mRNA downstream 93635 30002605 ~ 30271444 (+) False XLOC_010020
TCONS_00019940 mRNA downstream 208828 30117798 ~ 30245831 (+) False XLOC_010020
TCONS_00019941 mRNA downstream 208901 30117871 ~ 30267666 (+) True XLOC_010020
TCONS_00019942 mRNA downstream 392569 30301539 ~ 30306358 (+) True XLOC_010022
TCONS_00019943 mRNA downstream 407207 30316177 ~ 30326055 (+) True XLOC_010023
TCONS_00019912 other upstream 687284 29216274 ~ 29216360 (+) True XLOC_010005
TCONS_00019905 other upstream 884506 29016936 ~ 29019138 (+) True XLOC_010002
TCONS_00019885 other upstream 1515481 28388046 ~ 28388163 (+) True XLOC_009989
TCONS_00019873 other upstream 2348404 27549842 ~ 27555240 (+) False XLOC_009979
TCONS_00019870 other upstream 2353288 27543588 ~ 27550356 (+) False XLOC_009979
TCONS_00019938 other downstream 93782 30002752 ~ 30036693 (+) False XLOC_010020
TCONS_00019939 other downstream 171573 30080543 ~ 30080661 (+) True XLOC_010021
TCONS_00019951 other downstream 1061531 30970501 ~ 30971157 (+) True XLOC_010029
TCONS_00019955 other downstream 1725500 31634470 ~ 31634595 (+) True XLOC_010035
TCONS_00019961 other downstream 1920068 31829038 ~ 31836487 (+) True XLOC_010037

Expression Profile


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