RNA id: TCONS_00019940


Basic Information

Item Value
RNA id TCONS_00019940
length 2089
RNA type mRNA
GC content 0.52
exon number 18
gene id XLOC_010020
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 30002605 ~ 30271444 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tctttctcaggaTCTAGAGTGAAAATCTCTTTTTTTGTTCCTGAAGTGTTGCCCGCCATCGACTCTTCGTGGACAACAGCGTTTCCACCACTGCTCATCTCCTGAAAGGATAACAgtggtCTTCAGTCTACTCTGGGTCATGCTGTGTGGCTGAATTCTATGCTGTAGCTGAAATGAGGTTGGTGATTTTGGGGTCGCGGCCCCTTTTGGCCTTGACCCTCATGCTCACCCTCACCTGCCTAAAGCATCTGTGCCATGGTGCAACACCCTTTCCTCAGGATCTGGAACCCATCAGGACCGTTGGTAGTGAACACACCTACCTGTACCCCAGTTTCCAGGGGAACATGTCAGATAACGACACCGCCAGACTGGGCCTGGATTTTCAGAGGATGCTGCGGATTAACCACATGGTCTACATCGCTGCAAGAGATCACGTTTTTGCCATTAACCTCAGTGCTTCATTGGAGCGCATCGTCCCCCAACAGAAACTGACATGGAAGACAAAAGATGTGGAGAAATGCACAGTCAGGGGGAAAAACAGCGATGAGTGTTACAACTACATCAAAGTGCTGGTGCCACGTAACGATGAAACCCTCTTTGCGTGCGGAACCAATGCGTTCAACCCCACCTGTCGCAACTACAAGATGTCATCTCTAGAGCAGGACGGAGAAGAGGTGATCGGTCAAGCCCGCTGCCCTTTCGAGTCCCGCCAGTCCAACGTTGGCCTGTTTGCCGGCGGTGACTTCTACTCAGCCACGATGACTGATTTTCTAGCGAGCGATGCAGTGATTTACCGAAGTTTAGGAGAAAGCAGTCCTGTCCTGCGTACTGTAAAATATGACTCCAAGTGGCTGCGAGaaCCGCATTTTCTTCATGCCATCGAGTATGGGAACTACGTGTACTTCTTCCTCAGTGAGATTGCAGTGGAGTATACCACCCTTGGCAAGGTGGTGTTTTCCCGAGTGGCTCGCGTGTGTAAGAATGATAACGGCGGTTCTCCACGGGTTCTAGAAAGATACTGGACGTCTTTCCTGAAGGCCCGGTTAAACTGCTCAGTTCCTGGTGACTCTTTTTTCTACTTTGATGTTCTTCAGTCATTAACAAACGTCATGCAGATCAACCACAGGCCTGCAGTGTTGGGCGTCTTTACCACTCAAGCCAACAGCATCACTGGTTCTGCTGTATGTGCATTTTACATGGATGACATAGAGAAAGTGTTCAATGGGAAGTTTAAGGAGCAGCGAAACAGCGAGTCCGCCTGGACACCAGTTCCTGATGAAGCGGTGCCCAAACCCCGgCCAGGGTCGTGTGCTGGTGATGGCCCTGCTGCTGGTTACAAGTCCTCCACAAATTTCCCTGATGAGACTCTTACCTTCATTAAGTCTTATCCACTAATGGACGAGGCTGTGCCGTCTGTCAACAACCGACCCTGCTTCACACGAACCACCAGCAGGTTCAAGCTGACCCAGATTGCAGTGGACACGGCAGCTGGCCCATATAAGAACTACACTGTCGTGTTTCTGGGGTCAGAAAATGGACATGTCCTGAAGGTTTTAGCTAGCATGCATCCAAACTCCTCGTACAGCACTCAGGTTTTGGAGGACATCGATGTTTACAACCCTAACAAATGTAATGTGCGTGGGGAGGACCGGAGGATTCTGGGATTGGAGCTGGATAAAGACCATCATGCCCTGTTTGTGGCCTTTACAGGTTGCGTAATCCGTGTTCCACTCAGTCGCTGTTCGGATTATGGAATCTGCAGAAACTGCCTGTCCTCACGAGACCCCTATTGCATCTGGCTGAGCGCAGGGAACTGTGCCACGGTGGCGCCGGGATTCAAGTCTGGATTCGAGCAGTATGTAGAGAGTGGATATCCTCAGTATCCAGACAGCTGTCACGATGTCTTGGCAACGACTCGAAAGCAGAACCCTGCAGTGGACTCTGCATACGGAAAGACCTCACCCACAAGTGCCAGCACAACCAATCAGGGGCCAGCTGGTGCCCCTGAGACAGGTACCCACCCCGAGGAGGGGAGGCGGGGAGGGCAGGGGTCTCCTGACTTGGAGCCCGGCAGTGTGGAGATGGAGGG

Function

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0050919 negative chemotaxis biological_process
GO:0048843 negative regulation of axon extension involved in axon guidance biological_process
GO:0007411 axon guidance biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0071526 semaphorin-plexin signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0045499 chemorepellent activity molecular_function
GO:0030215 semaphorin receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-119 Enables chemorepellent activity. Predicted to be involved in several processes, including generation of neurons; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Is expressed in brain; lens; and solid lens vesicle. Orthologous to human SEMA6C (semaphorin 6C).

Ensembl:

ensembl_id ENSDART00000135723

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021964 lncRNA upstream 78074 30002752 ~ 30039724 (+) False XLOC_010020
TCONS_00019936 lncRNA upstream 208828 29903644 ~ 29908970 (+) True XLOC_010019
TCONS_00021723 lncRNA upstream 304546 29721663 ~ 29813252 (+) False XLOC_010018
TCONS_00021722 lncRNA upstream 308901 29721663 ~ 29808897 (+) False XLOC_010018
TCONS_00021724 lncRNA upstream 379370 29729983 ~ 29738428 (+) True XLOC_010018
TCONS_00021966 lncRNA downstream 84032 30329863 ~ 30330881 (+) False XLOC_010024
TCONS_00021967 lncRNA downstream 84449 30330280 ~ 30330881 (+) True XLOC_010024
TCONS_00021968 lncRNA downstream 845167 31090998 ~ 31094580 (+) True XLOC_010030
TCONS_00021725 lncRNA downstream 875925 31121756 ~ 31128084 (+) False XLOC_010031
TCONS_00021726 lncRNA downstream 875925 31121756 ~ 31135431 (+) True XLOC_010031
TCONS_00019935 mRNA upstream 421009 29690708 ~ 29696789 (+) True XLOC_010017
TCONS_00019934 mRNA upstream 432940 29663809 ~ 29684858 (+) True XLOC_010016
TCONS_00019933 mRNA upstream 433605 29650698 ~ 29684193 (+) False XLOC_010016
TCONS_00019929 mRNA upstream 470060 29630965 ~ 29647738 (+) False XLOC_010015
TCONS_00019942 mRNA downstream 55708 30301539 ~ 30306358 (+) True XLOC_010022
TCONS_00019943 mRNA downstream 70346 30316177 ~ 30326055 (+) True XLOC_010023
TCONS_00019944 mRNA downstream 192210 30438041 ~ 30519254 (+) False XLOC_010025
TCONS_00019945 mRNA downstream 237212 30483043 ~ 30520157 (+) True XLOC_010025
TCONS_00019946 mRNA downstream 330070 30575901 ~ 30577136 (+) True XLOC_010026
TCONS_00019939 other upstream 37137 30080543 ~ 30080661 (+) True XLOC_010021
TCONS_00019938 other upstream 81105 30002752 ~ 30036693 (+) False XLOC_010020
TCONS_00019912 other upstream 901438 29216274 ~ 29216360 (+) True XLOC_010005
TCONS_00019905 other upstream 1098660 29016936 ~ 29019138 (+) True XLOC_010002
TCONS_00019885 other upstream 1729635 28388046 ~ 28388163 (+) True XLOC_009989
TCONS_00019951 other downstream 724670 30970501 ~ 30971157 (+) True XLOC_010029
TCONS_00019955 other downstream 1388639 31634470 ~ 31634595 (+) True XLOC_010035
TCONS_00019961 other downstream 1583207 31829038 ~ 31836487 (+) True XLOC_010037
TCONS_00019968 other downstream 1676956 31922787 ~ 31923924 (+) True XLOC_010039
TCONS_00019985 other downstream 1946366 32192197 ~ 32196767 (+) True XLOC_010050

Expression Profile

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