RNA id: TCONS_00019943


Basic Information

Item Value
RNA id TCONS_00019943
length 4344
RNA type mRNA
GC content 0.40
exon number 4
gene id XLOC_010023
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 30316177 ~ 30326055 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCCTGGGACAATGGATAAGGGCCCTCCTGGACCAGTAGCGGTTCCCCAAACCCCCCAATGGGTAGCAGAAGTGGACAAGTTAACAAAGGATGTGAACAGCACTGAGGATGAAGAAGAGCCGATGAAGTCTGCAAAAATGGAACCCAGTACCCTACCATGGCCTGAGAACAAACCCGAAACACAGATTCCCCCAGTCCGTGATGGTGAAACTACAAGCGTGAGGTCCGATTGCACTTCTCTCCGTGGTGGTCTCAGCCGGACCGAGAGCGAGCGAGAAGAGTTCATGATGAAAGAGAAGAGGAAGACTGGTGAGGATTGGAGGGAGATGGAGGCTGGGAAAGAAGAGAGAGTTTCTGACATTGGACTGAGAAACGGGGTGAAAAGCACCCTTACTGAGATCGAGTTGGAAGAGGTCAACACAATGCCGGAGAACGCAGCTCGAGTCTTCAGCCCCAGCATCACCATCCTGCGCTCCACCAGTCAGCAGGAGGCTGCAGAACACTGGAGAGATCAAGAAGAGGAAGCGAGAAGCCCCTTCCTTGGGTCACATGGGACACATGGCACACCGCTAGAAGAGTATTACCAGGACTGGCCGGATACACACAGATCACACTGCTgtaACTGTGGTTGCTGTAACCGTGATGCTCTTAAACTGGGAGCTTCCATGTTCACTTCAGCTTTGATCttccccttgttggtgtggggTGGCTATGTTTTCCTGCCCTTTGATGCTCCTCTACTGGACAGTGCCCCCCTAAGGCTGGTCTACACCCTGCGCTGCTCAGTTTTTGCAGTCATACCAATTGTTCTTGGTATGTTGGTTCTTGGCGTGTCCCGTCTGTGGTATCGCTCCTTGAAACCGCGGTTTGAAGGGGAGAAGGAAGTTAAGCAGGTTGCTGTTCATCAGCGTTATGTGGAGGACTCCATCTCGCTTTTCCTGCTTTACTTTCTCCAACTGACTGTCATGGCTGCCTACCTGAATCAGGATCTGCTTAAACTTATTCCCCTCCTCACCATTGTTTTTGCCTTTGGCAGATTGCTCTACTGGGTCGCAGCAGCGTGTGGCAGCAGTTTGAGAGGCGTCGGCTTTGGCTTTTCGTTTCTGCCCATGTTGGTTATGCTGGTGGCCAACATCTACTTCATCTTCCTCTCCGAATCTGCAGGCTCAATCTTTGCCCCGAACATCCCAGATCCACCTGTTCCTTCCAACAAACAGAGGTTCTGGGGATAAACAGACGACACATGACTATTTTCTGCTGCTGCCAAATATAGACCAGATCGCTTTCGGCTTAAAGCCCACTGAAATTGGACTACGAGACATTAGTTTCTAAGAATGTGATTTCGTTTTTCTCTCCTGTTCTCTGCATCCCAGAGCATTTTTGTATAAAGAATAGATGGGTTAGATTTGCCAGAACTTTGCTCAAAAGGAGAGAGATATGAGAAGTAGAAAGAaggtaatgttttatttttctctgaACTAACTTGTGTACTTGGGAACTTGTGTAACTTTAGATGTTAAACtatgaattaaaaaaaggaacaacCCTTTATTGCAGCCAAACATGAGCGGAATAAGCTGCTTCATCCATCAAGAGAGCTTCACATGAACCCGTTTCAATGCATCTATTTTAAGATGAGAATATCAACAGAATGAGCACAATTCTGAATATTTATACCACATGTGTTTTTTAAAGTtggcaatgtttaaaaaaagtttgcatTTGTTAGGCATTGTTTGCTTATTCAAGTCTAagctgttgtgttgtgtgtgaagtTAGTGGCTTGCCCAAACCTGTATTTTTCCACAGCCACTCCTTTATCTCTCTTTGAAAATTTAATGGCAATGTGAAGTTTATTCAGAGTGTAGATGTAtatttttaacagatttgttaAAAGGTTTAGAAAGATactggtagttttttttttcctgaagcaCTTGCGAAATGCTAATCAAAGCTTCAAAGAGGTTTATCTTTTGGGCAAATGAATCTATCTAGCttaatttaaatcacatttttaacaGTCAGACtctttgaataaatgtttttggtaataaataaacatgcatacatTAACTAAAACGTTGTTAATCGCAAAGCGTCGTGAAAAGTGAACCTGTTCAACAAGTTCgcgtgtttttttgttttgtttgttttttgtcggAGGTCAAAAATAGGCCGTTTCCTGAAGTCTCATTTGACAGGTCGAATACAGGTTGAAAGAGGACCACCAGCTCAACTAATAATTGATTATATCATACTGTAAATGTCTGAGTCAGAATGACATCTCAAAGCCGAAGGAGAAACGGCCCTTGTTTGTTGCGGATGAGGGAGAACTGCCCGTTTCGAAAGCTGAGGAGAAATTGCTGTGGTAAGTTTAAGgattatctatttaaaaaaagaggaaaatatctaaaaaaaaataaataaataaagattatatataaaaatagtaaGTTAACGTCACTGCTGTTACGCAATTaattcaaacaacaaaaaaagctcaCTTTAAGTAACCTGGTAGATATATTTGTCGGCCTACTCTGCTTGAAGTAAAGTGTTCGAGTATGTCATTCAGTATTGTCAATAATGATATATGTTGTGTTTGCCCTCATAAATTTGACATACATTCAGATTTGATCGTTGCTTGTATTTAGATCGGTGTATTCATGTTCCGTGGTGATTGCTCACTATGCCAGCTGTCTGTCGGAAGTTGCAAATCAAGTTATGTAATGCCACTTGTTTGATCgtccacattattattattacacagatTCGAGGAACGCGCTCGTGCCAGACTGGAGTCAGTGCAGATCATGCCCTCAGTCACAGACCGGACCAAAGTGTTGTATGAACACAATCGAGACCTTCTGCAATCCCTCACAGCCTGATTCCCGGCCCCGAGAAGAGCTCTCAGGTTTGCGTCTAACATTCTTTGCGCTGAATCTGTCGGCTGTTTAttagattcattttcttttaatggCCCCATTCTGTAACGTTGCAATTAAGTCTAGCTCTCTAGCTTGAGTAAGCTAGTTTACTCGGTTTGGGTAAGGACAATTGGTAAAACGGATAATAAGTCtacaagagagagaaaaaaaaactaaagcgtTAGCCTATCTAGATGCGGCCTTGCATCTCTCAGCGACGAAGAGCTAGTGACGTCAATGAGGGGTGtgtaggtgagcccattaaaaagcattgcatgcaactcagattgcatctgcaccatgTCTTCATCCAGACGCCCCCAAAAAATGAGAAGCCCCAGTCTGCAGCCTGCAGATTTGGGCGGGGATGAATCTGGGGCGGGACTGCACATTCAGCCACGCCCACCTGTGATTTCATTGGTTAGTGGAAACGTAATAGCGTCAATGCCCATACGTGCTGTCAACAGGAAATGCATTTGCATCTttctaaatattgtttttattgctaataaacacaaaaatacacaaaagtgGACATTCTTGCTGAGTGTTTTAAATGTTAACTATGTTAACAGTTATGTGAATTTCATAATGGTATTTCTCCtgcaaaaaatattacaaaagaccAAAAAGACTCTCTTCACAATGGTGTCCCTTCATGTCTGCCTTTCAGAAATGCAGTGATTTTAGTTCTGattttttaatggtttattattttacttcaaaataaaaatgcatattgcatatttacaACAATTAAAGGTGGAgtctgaacaaaaataaaataataaataaaaatgcagtgtATTTAGTTCAGTTAATTCTTTTTCCCTTTGAATGGGAGAGATCTCTGGAAAATTTACAACTGATAATATTATCATTACACTTTGATTTAAGGCTATTAAAATATCGGGCGTGTGTCCAAATGTTTCTCTTTCAATACTGCACTGCTTTGAGTTtgaaaattacttatttattaaaagcaGGGATAAGCTATTATTTATCAAGGGAAGTATATGTTTGTAACCTTTTCACTTATTAAATCAGATTATTTCATCATATAATGCATTTGTTTACTTTGATGCtgctataaatataaatgtatattatccgTTATATGTAAATGTCCCAGCACGAGAAAAAttctttattacattttttcatattacCTGGTATGTCATCTATGAATGCAATCGGTTCATTTATTGATCCATTAaagttttgttcagtttctccatttGAATGAAGACAGTGCTCTGCTGCCACCTACGGGGTGGTTTTGATATCTGttctacattttatttaatatattaattaattagttaatccaaaagtttataattttataatctaATACTGCTAAATTACAATGCAGTcttcttggttttatttttgtaatatttgtaaatacagg

Function

GO:

id name namespace
GO:0045055 regulated exocytosis biological_process
GO:0032588 trans-Golgi network membrane cellular_component
GO:0005765 lysosomal membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-120807-1 Predicted to be involved in regulated exocytosis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in lysosomal membrane and trans-Golgi network membrane. Orthologous to human TMEM79 (transmembrane protein 79).

Ensembl:

ensembl_id ENSDART00000109505

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021965 lncRNA upstream 198193 30002752 ~ 30117984 (+) False XLOC_010020
TCONS_00021964 lncRNA upstream 276453 30002752 ~ 30039724 (+) False XLOC_010020
TCONS_00019936 lncRNA upstream 407207 29903644 ~ 29908970 (+) True XLOC_010019
TCONS_00021723 lncRNA upstream 502925 29721663 ~ 29813252 (+) False XLOC_010018
TCONS_00021966 lncRNA downstream 3808 30329863 ~ 30330881 (+) False XLOC_010024
TCONS_00021967 lncRNA downstream 4225 30330280 ~ 30330881 (+) True XLOC_010024
TCONS_00021968 lncRNA downstream 764943 31090998 ~ 31094580 (+) True XLOC_010030
TCONS_00021725 lncRNA downstream 795701 31121756 ~ 31128084 (+) False XLOC_010031
TCONS_00021726 lncRNA downstream 795701 31121756 ~ 31135431 (+) True XLOC_010031
TCONS_00019942 mRNA upstream 9819 30301539 ~ 30306358 (+) True XLOC_010022
TCONS_00019937 mRNA upstream 44733 30002605 ~ 30271444 (+) False XLOC_010020
TCONS_00019941 mRNA upstream 48511 30117871 ~ 30267666 (+) True XLOC_010020
TCONS_00019940 mRNA upstream 70346 30117798 ~ 30245831 (+) False XLOC_010020
TCONS_00019935 mRNA upstream 619388 29690708 ~ 29696789 (+) True XLOC_010017
TCONS_00019944 mRNA downstream 111986 30438041 ~ 30519254 (+) False XLOC_010025
TCONS_00019945 mRNA downstream 156988 30483043 ~ 30520157 (+) True XLOC_010025
TCONS_00019946 mRNA downstream 249846 30575901 ~ 30577136 (+) True XLOC_010026
TCONS_00019947 mRNA downstream 278332 30604387 ~ 30612730 (+) True XLOC_010027
TCONS_00019948 mRNA downstream 606989 30933044 ~ 31006689 (+) False XLOC_010028
TCONS_00019939 other upstream 235516 30080543 ~ 30080661 (+) True XLOC_010021
TCONS_00019938 other upstream 279484 30002752 ~ 30036693 (+) False XLOC_010020
TCONS_00019912 other upstream 1099817 29216274 ~ 29216360 (+) True XLOC_010005
TCONS_00019905 other upstream 1297039 29016936 ~ 29019138 (+) True XLOC_010002
TCONS_00019885 other upstream 1928014 28388046 ~ 28388163 (+) True XLOC_009989
TCONS_00019951 other downstream 644446 30970501 ~ 30971157 (+) True XLOC_010029
TCONS_00019955 other downstream 1308415 31634470 ~ 31634595 (+) True XLOC_010035
TCONS_00019961 other downstream 1502983 31829038 ~ 31836487 (+) True XLOC_010037
TCONS_00019968 other downstream 1596732 31922787 ~ 31923924 (+) True XLOC_010039
TCONS_00019985 other downstream 1866142 32192197 ~ 32196767 (+) True XLOC_010050

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_08412094_08418277.mRNA True 3772 mRNA 0.42 7 CI01000027 8410163 ~ 8418633 (+)