RNA id: TCONS_00019946


Basic Information

Item Value
RNA id TCONS_00019946
length 1236
RNA type mRNA
GC content 0.44
exon number 1
gene id XLOC_010026
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 30575901 ~ 30577136 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTTGTAGTAATTCTATAAATGATTAATTGAATGCATCTTTACTGTGCTAAACTAGCCCATAAAATGTATGCATCGATCTGCACATTGCAAAATTATCCacctaataaaaacatttttttcttaatttgtttccTCTAGGTCAAATTTTCAACTGATCTACAATTAAGAGTGATCATCGATCCATCATGAACCCCAGCGCTGAATCTCCCTCCAGCATCCACACTGACTGCGCTGAGGTCCAGGTCCCTGGGCAGGTGTTTCTGGTCATCGCAGTGGCCAGTTTGAGCGAAAACCTCTTGGTGATTGTGGCTGTGATCAAAAACAAGAATCTGCACTCTCCCATGTACTGCTTTATCTGTAACCTGGCTGTGTTTAACACCATCTCTAGCTTCTCCAAGGCACTAGAAAATATACTACTGTTGTTTAAAGACGCCGGACGCCTGAACTCACGCGGCCCTTTTGAGCTGAAGATAGACGATATCATGGACTCTTTACTCTGCATGTGCTTTCTAGGTTCAATCTTCAGCATCCTCGCCATAGCTGTGGATCGGTACATTAGCATTTTCCATGCGCTACGCTATCACATGCTCATGACCATGCGGCGTGTGCTGATCATTTTGTTCACTATATGGGTTTTGTGTGGCACCAGTGGAGCCCTAATGGTCGGCTTTTTTGAGGCAGCCACTGTAAAAATCTTCTTCATCGTGCTCTTCTTCACAGCTCTGCTCCTGATCCTCCTGCTTTATGTTCATATGTTCCTGTTAGCACGCCATCATGCAAACCGAATCGCGTCTATGCCTGGTGCTCAGGCGCAACACAGGAAAAGCGGCCTGAGGGGGGCGCTGACGCTCACCATATTGATCGGGGTATTCGTGGCCTGCTGGGCTCCGTTCTCCCTTCATCTGCTGATTATGATGATTTGCCCAGAGAACCCGTATTGTGAATGCTACCGTTCACTCTTTCAGCTGCATGTAGTGTTACTGGTGAGTCACGCTGTTATTGATCCGGCAATTTACGCTTTCCGTAGCGTGGAGCTGCGCAACACCTATAAGAAGATGCTTCTGTCCTCAGCTTCAAGGATCTGCAAGCGGTGTGCTTGAATGAGAACCAGGTGTTTCATGTGATaattatgaaaaattataattattaaagctcctgtatgtatgttttttgattcttctaaagcattaaaaaacataatatgtttgtagatatttaagaaacatgccaagtga

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007189 adenylate cyclase-activating G protein-coupled receptor signaling pathway biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0033555 multicellular organismal response to stress biological_process
GO:0030325 adrenal gland development biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004977 melanocortin receptor activity molecular_function
GO:0004978 corticotropin receptor activity molecular_function

KEGG:

id description
ko04024 cAMP signaling pathway
ko04080 Neuroactive ligand-receptor interaction
ko04925 Aldosterone synthesis and secretion
ko04927 Cortisol synthesis and secretion
ko04934 Cushing syndrome
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-030502-2 Enables corticotropin receptor activity. Acts upstream of or within adenylate cyclase-activating G protein-coupled receptor signaling pathway; adrenal gland development; and multicellular organismal response to stress. Located in cytoplasm and plasma membrane. Is expressed in adipose tissue; integument; pleuroperitoneal region; and steroid hormone secreting cell. Human ortholog(s) of this gene implicated in West syndrome and glucocorticoid deficiency 1. Orthologous to human MC2R (melanocortin 2 receptor).

Ensembl:

ensembl_id ENSDART00000077231

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021966 lncRNA upstream 245020 30329863 ~ 30330881 (+) False XLOC_010024
TCONS_00021967 lncRNA upstream 245020 30330280 ~ 30330881 (+) True XLOC_010024
TCONS_00021965 lncRNA upstream 457917 30002752 ~ 30117984 (+) False XLOC_010020
TCONS_00021964 lncRNA upstream 536177 30002752 ~ 30039724 (+) False XLOC_010020
TCONS_00019936 lncRNA upstream 666931 29903644 ~ 29908970 (+) True XLOC_010019
TCONS_00021968 lncRNA downstream 513862 31090998 ~ 31094580 (+) True XLOC_010030
TCONS_00021725 lncRNA downstream 544620 31121756 ~ 31128084 (+) False XLOC_010031
TCONS_00021726 lncRNA downstream 544620 31121756 ~ 31135431 (+) True XLOC_010031
TCONS_00021969 lncRNA downstream 1383772 31960908 ~ 31985059 (+) False XLOC_010041
TCONS_00019972 lncRNA downstream 1383780 31960916 ~ 31970381 (+) True XLOC_010041
TCONS_00019945 mRNA upstream 55744 30483043 ~ 30520157 (+) True XLOC_010025
TCONS_00019944 mRNA upstream 56647 30438041 ~ 30519254 (+) False XLOC_010025
TCONS_00019943 mRNA upstream 249846 30316177 ~ 30326055 (+) True XLOC_010023
TCONS_00019942 mRNA upstream 269543 30301539 ~ 30306358 (+) True XLOC_010022
TCONS_00019937 mRNA upstream 304457 30002605 ~ 30271444 (+) False XLOC_010020
TCONS_00019947 mRNA downstream 27251 30604387 ~ 30612730 (+) True XLOC_010027
TCONS_00019948 mRNA downstream 355908 30933044 ~ 31006689 (+) False XLOC_010028
TCONS_00019949 mRNA downstream 382287 30959423 ~ 30966580 (+) False XLOC_010028
TCONS_00019950 mRNA downstream 384686 30961822 ~ 30966364 (+) True XLOC_010028
TCONS_00019952 mRNA downstream 819511 31396647 ~ 31402154 (+) True XLOC_010032
TCONS_00019939 other upstream 495240 30080543 ~ 30080661 (+) True XLOC_010021
TCONS_00019938 other upstream 539208 30002752 ~ 30036693 (+) False XLOC_010020
TCONS_00019912 other upstream 1359541 29216274 ~ 29216360 (+) True XLOC_010005
TCONS_00019905 other upstream 1556763 29016936 ~ 29019138 (+) True XLOC_010002
TCONS_00019885 other upstream 2187738 28388046 ~ 28388163 (+) True XLOC_009989
TCONS_00019951 other downstream 393365 30970501 ~ 30971157 (+) True XLOC_010029
TCONS_00019955 other downstream 1057334 31634470 ~ 31634595 (+) True XLOC_010035
TCONS_00019961 other downstream 1251902 31829038 ~ 31836487 (+) True XLOC_010037
TCONS_00019968 other downstream 1345651 31922787 ~ 31923924 (+) True XLOC_010039
TCONS_00019985 other downstream 1615061 32192197 ~ 32196767 (+) True XLOC_010050

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_08509097_08512799.mRNA False 2195 mRNA 0.43 2 CI01000027 8509097 ~ 8513905 (+)
rainbow trout (Oncorhynchus mykiss) TU834343 False 557 TUCP 0.57 1 NC_048572.1 64697313 ~ 64697869 (+)