RNA id: TCONS_00019948


Basic Information

Item Value
RNA id TCONS_00019948
length 585
RNA type mRNA
GC content 0.32
exon number 35
gene id XLOC_010028
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 30933044 ~ 31006689 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tatgtttttaacattgatttGattttatgttataATAATGTGGTTGCATTAAAAACCCTgccaaatAAGTCACCACAAGGTGGCGCCTTTTATATGTTAATCTACCGAATTATAAGattaaaaataaacacatacaaacaagtcCACAAttggtGTCAGagtAGGGAACAAGCCAAAAGAAAAATGCTCTCATCCAGTCTAAGATGTCCAGTTCCAGGTTCACTTTCAGCCTCAATGACAGGCTATATAGGttttcCCATGAACCTATCATTcggagatatttatttatttattttaaatttgaccttaTATACtatgaactttcccaattttaaaaacatcaaaacCGGATTTTTGTTGCCATCTATTGGTGAGGTGATTATTTTGACACAATTTCTTATCTCTTTAACTGCAATTTGGTTATGCCCAATCATTTCTGCAAAGATGAAAGtaatacaacaacagcaatataaacaaattactcaaagattgattcatccaaaagttccagagcatgtcttaggTTTGGTCTTTTTCTACCTAAACTTTTTTTATAAGGACATGAATGaaacAGCTGAACTACTT

Function

GO:

id name namespace
GO:0006749 glutathione metabolic process biological_process
GO:0019432 triglyceride biosynthetic process biological_process
GO:0005777 peroxisome cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016740 transferase activity molecular_function
GO:0004602 glutathione peroxidase activity molecular_function
GO:0015035 protein disulfide oxidoreductase activity molecular_function
GO:0004364 glutathione transferase activity molecular_function
GO:0008374 O-acyltransferase activity molecular_function
GO:0004144 diacylglycerol O-acyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100922-14 Predicted to enable glutathione peroxidase activity and glutathione transferase activity. Predicted to be involved in glutathione metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion and peroxisome.

Ensembl:

ensembl_id ENSDART00000184453

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021966 lncRNA upstream 602163 30329863 ~ 30330881 (+) False XLOC_010024
TCONS_00021967 lncRNA upstream 602163 30330280 ~ 30330881 (+) True XLOC_010024
TCONS_00021965 lncRNA upstream 815060 30002752 ~ 30117984 (+) False XLOC_010020
TCONS_00021964 lncRNA upstream 893320 30002752 ~ 30039724 (+) False XLOC_010020
TCONS_00019936 lncRNA upstream 1024074 29903644 ~ 29908970 (+) True XLOC_010019
TCONS_00021968 lncRNA downstream 84309 31090998 ~ 31094580 (+) True XLOC_010030
TCONS_00021725 lncRNA downstream 115067 31121756 ~ 31128084 (+) False XLOC_010031
TCONS_00021726 lncRNA downstream 115067 31121756 ~ 31135431 (+) True XLOC_010031
TCONS_00021969 lncRNA downstream 954219 31960908 ~ 31985059 (+) False XLOC_010041
TCONS_00019972 lncRNA downstream 954227 31960916 ~ 31970381 (+) True XLOC_010041
TCONS_00019947 mRNA upstream 320314 30604387 ~ 30612730 (+) True XLOC_010027
TCONS_00019946 mRNA upstream 355908 30575901 ~ 30577136 (+) True XLOC_010026
TCONS_00019945 mRNA upstream 412887 30483043 ~ 30520157 (+) True XLOC_010025
TCONS_00019944 mRNA upstream 413790 30438041 ~ 30519254 (+) False XLOC_010025
TCONS_00019943 mRNA upstream 606989 30316177 ~ 30326055 (+) True XLOC_010023
TCONS_00019952 mRNA downstream 389958 31396647 ~ 31402154 (+) True XLOC_010032
TCONS_00019953 mRNA downstream 505050 31511739 ~ 31517227 (+) True XLOC_010033
TCONS_00019954 mRNA downstream 535956 31542645 ~ 31547800 (+) True XLOC_010034
TCONS_00019956 mRNA downstream 795514 31802203 ~ 31813015 (+) False XLOC_010036
TCONS_00019957 mRNA downstream 795514 31802203 ~ 31813018 (+) False XLOC_010036
TCONS_00019939 other upstream 852383 30080543 ~ 30080661 (+) True XLOC_010021
TCONS_00019938 other upstream 896351 30002752 ~ 30036693 (+) False XLOC_010020
TCONS_00019912 other upstream 1716684 29216274 ~ 29216360 (+) True XLOC_010005
TCONS_00019905 other upstream 1913906 29016936 ~ 29019138 (+) True XLOC_010002
TCONS_00019885 other upstream 2544881 28388046 ~ 28388163 (+) True XLOC_009989
TCONS_00019955 other downstream 627781 31634470 ~ 31634595 (+) True XLOC_010035
TCONS_00019961 other downstream 822349 31829038 ~ 31836487 (+) True XLOC_010037
TCONS_00019968 other downstream 916098 31922787 ~ 31923924 (+) True XLOC_010039
TCONS_00019985 other downstream 1185508 32192197 ~ 32196767 (+) True XLOC_010050
TCONS_00019992 other downstream 1666131 32672820 ~ 32672936 (+) True XLOC_010055