RNA id: TCONS_00021968


Basic Information

Item Value
RNA id TCONS_00021968
length 1911
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id XLOC_010030
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 31090998 ~ 31094580 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGAAATCTCAATCACGTGTCTCTGATCCCACGATACTTCCCAATCTCATTTAAAGGTATAAAACATTAGTTTCACTGCATTGCACTCTCTACACTACTGCCAGAATTTTCACAAACATGCTGTCTGAGATTAAAACACACTGCTGCTGTAGACATAAAATATATGTAACCCCCGATCTAAACACAGGTGTAGATGTGAAGGAGAGTATCTGAAAAACACGCTGCAGATTACTGGAGCAAACGATGCAAAGCAGCTGACCTTTCAAACTGAAGTGCAGGAATGAGTGTATTAACTGACTCCAGTATTGATAAGGAGCCTCTTCAGAAGTCAACTTCTCTCCCGTCTGAAGCGAAAGACTTCCTGCCACTGCCGCTTTCACAGCCGCGATCAAACACCAGCCTCTCTCAAGTCACTTGGGGAAACTCGGCTATCAAAGAAAGACTTATACCCCCCTTTCACACTTCCTCATCCCCATCCCGTCTCATCCTACGACCCGCCGCTAAAAAGAGTTCAAGTGAAAAACACACAATTAGGCTGAACTTGAGCAGAGACTGATGTGTTAAGTGTCTCTCAGGGGGTGAGTAAAAGGACAGCAAGCGTCTTCTCAAACTCTGATTAAATTAGACCAATGCCGACGAAAGACGTGCTTTAAAATGACACGCACAACTGCCTATTAGACAGAGACAAATGGACGTGGAGGATGTAGTTTGGAGATATATGCTAATTCTGCTGTAATAATCAGCAGGTGTGTCTTCTTAATGTCTACCATCGCAGTAAATGTTCAGAGCGAATATTGTCGTAGTACTACATTACCTGCTGTCGATAAGACGAAACAGATTGTGAACAACGAAGACTTTAAAAAAGCTCAAGAATATGCctcttttttttgctgttgttgttttccgAAGAAGTTGATCAAATTATGTTGGAGAAAATGATTCTAATTCTACACATCTGAGGCAGATGGAGGCAGTGGTCCGTCACGATGTGTCTGACAGCAGGGATGTGAAAACTTCCAAGCGCAGTTCAAACAGTTTTGTTGAAGACTTTGATGCGGAGACAGAAAAAGTCTCTTGGAAGCCATTTCCTCTTATGCCACAGATTCCGTTGCGAAACATGCCACCTGAGGACACCAACCGCCTCTATATTTAGAGATTATTGACTCGGTATACATACAATAATGGGTTTATCTCAGGAAATTAAACAGGGATGGatgtatttaaaagaaatatatcTGGGTTGTGTAATTGAGATCACGGTGGCACCATTTGAACCCTCAATGTAAAATCagcatctttctttctttattgcaTTAAGTGATCCTTCCACTATGGCCCTGCTTAGACctggtacactcaaaaaatggatCAAAAATTGgtccaaagaatgtaactatgtttaaactaaacaattcatttatgtttgtCTATTACAACCACAGTTGTGTTGGATAAAAATTtaagttttaacaaatttaaaaagcttgcttaattaaaatgaatgaaagcaaagagcatagaattaccaataggcaacactcaatagaacgttccattgcaacagcagtgcccagcaacaggcccggattccgccattttggagtgaaagcgatcggctgtccattggattttattgctgtcgcgatggcaagcagctgctttgttttttatttatttatttaaagagcgcattaaagctgagatacaacctgaaagacgacaatacaacacttactatcacaatcatcagcacatttaatagtttattttacagacttataataagCTGTTTTGTTggaattttcatttcaaaatggccACCGTGCCATCTAGTGGATGTTttccaaatcgcactagagtgtcgcttcatggtgattctatgctctttgatgaaagggagttgtgttgcttc

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0021536 diencephalon development biological_process
GO:0035239 tube morphogenesis biological_process
GO:0048747 muscle fiber development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007224 smoothened signaling pathway biological_process
GO:0048513 animal organ development biological_process
GO:1990399 epithelium regeneration biological_process
GO:0055001 muscle cell development biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0031076 embryonic camera-type eye development biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0021983 pituitary gland development biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0007418 ventral midline development biological_process
GO:0007420 brain development biological_process
GO:0030900 forebrain development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0021510 spinal cord development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021966 lncRNA upstream 760117 30329863 ~ 30330881 (+) False XLOC_010024
TCONS_00021967 lncRNA upstream 760117 30330280 ~ 30330881 (+) True XLOC_010024
TCONS_00021965 lncRNA upstream 973014 30002752 ~ 30117984 (+) False XLOC_010020
TCONS_00021964 lncRNA upstream 1051274 30002752 ~ 30039724 (+) False XLOC_010020
TCONS_00019936 lncRNA upstream 1182028 29903644 ~ 29908970 (+) True XLOC_010019
TCONS_00021725 lncRNA downstream 27176 31121756 ~ 31128084 (+) False XLOC_010031
TCONS_00021726 lncRNA downstream 27176 31121756 ~ 31135431 (+) True XLOC_010031
TCONS_00021969 lncRNA downstream 866328 31960908 ~ 31985059 (+) False XLOC_010041
TCONS_00019972 lncRNA downstream 866336 31960916 ~ 31970381 (+) True XLOC_010041
TCONS_00021970 lncRNA downstream 998132 32092712 ~ 32095588 (+) False XLOC_010047
TCONS_00019948 mRNA upstream 84309 30933044 ~ 31006689 (+) False XLOC_010028
TCONS_00019949 mRNA upstream 124418 30959423 ~ 30966580 (+) False XLOC_010028
TCONS_00019950 mRNA upstream 124634 30961822 ~ 30966364 (+) True XLOC_010028
TCONS_00019947 mRNA upstream 478268 30604387 ~ 30612730 (+) True XLOC_010027
TCONS_00019946 mRNA upstream 513862 30575901 ~ 30577136 (+) True XLOC_010026
TCONS_00019952 mRNA downstream 302067 31396647 ~ 31402154 (+) True XLOC_010032
TCONS_00019953 mRNA downstream 417159 31511739 ~ 31517227 (+) True XLOC_010033
TCONS_00019954 mRNA downstream 448065 31542645 ~ 31547800 (+) True XLOC_010034
TCONS_00019956 mRNA downstream 707623 31802203 ~ 31813015 (+) False XLOC_010036
TCONS_00019957 mRNA downstream 707623 31802203 ~ 31813018 (+) False XLOC_010036
TCONS_00019951 other upstream 119841 30970501 ~ 30971157 (+) True XLOC_010029
TCONS_00019939 other upstream 1010337 30080543 ~ 30080661 (+) True XLOC_010021
TCONS_00019938 other upstream 1054305 30002752 ~ 30036693 (+) False XLOC_010020
TCONS_00019912 other upstream 1874638 29216274 ~ 29216360 (+) True XLOC_010005
TCONS_00019905 other upstream 2071860 29016936 ~ 29019138 (+) True XLOC_010002
TCONS_00019955 other downstream 539890 31634470 ~ 31634595 (+) True XLOC_010035
TCONS_00019961 other downstream 734458 31829038 ~ 31836487 (+) True XLOC_010037
TCONS_00019968 other downstream 828207 31922787 ~ 31923924 (+) True XLOC_010039
TCONS_00019985 other downstream 1097617 32192197 ~ 32196767 (+) True XLOC_010050
TCONS_00019992 other downstream 1578240 32672820 ~ 32672936 (+) True XLOC_010055

Expression Profile

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