Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00019952 |
| length | 607 |
| RNA type | mRNA |
| GC content | 0.53 |
| exon number | 2 |
| gene id | XLOC_010032 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 31396647 ~ 31402154 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0032502 | developmental process | biological_process |
| GO:0035992 | tendon formation | biological_process |
| GO:0000977 | RNA polymerase II transcription regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| GO:0046983 | protein dimerization activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-090806-1 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within tendon formation. Is expressed in adductor mandibulae; caudal fin; extraocular musculature; sternohyoid; and vertical myoseptum. Orthologous to human SCX (scleraxis bHLH transcription factor). |
| ensembl_id | ENSDART00000011858 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00021726 | lncRNA | upstream | 261216 | 31121756 ~ 31135431 (+) | True | XLOC_010031 |
| TCONS_00021725 | lncRNA | upstream | 268563 | 31121756 ~ 31128084 (+) | False | XLOC_010031 |
| TCONS_00021968 | lncRNA | upstream | 302067 | 31090998 ~ 31094580 (+) | True | XLOC_010030 |
| TCONS_00021966 | lncRNA | upstream | 1065766 | 30329863 ~ 30330881 (+) | False | XLOC_010024 |
| TCONS_00021967 | lncRNA | upstream | 1065766 | 30330280 ~ 30330881 (+) | True | XLOC_010024 |
| TCONS_00021969 | lncRNA | downstream | 558754 | 31960908 ~ 31985059 (+) | False | XLOC_010041 |
| TCONS_00019972 | lncRNA | downstream | 558762 | 31960916 ~ 31970381 (+) | True | XLOC_010041 |
| TCONS_00021970 | lncRNA | downstream | 690558 | 32092712 ~ 32095588 (+) | False | XLOC_010047 |
| TCONS_00019987 | lncRNA | downstream | 864965 | 32267119 ~ 32270270 (+) | True | XLOC_010051 |
| TCONS_00021971 | lncRNA | downstream | 876845 | 32278999 ~ 32314568 (+) | False | XLOC_010052 |
| TCONS_00019948 | mRNA | upstream | 389958 | 30933044 ~ 31006689 (+) | False | XLOC_010028 |
| TCONS_00019949 | mRNA | upstream | 430067 | 30959423 ~ 30966580 (+) | False | XLOC_010028 |
| TCONS_00019950 | mRNA | upstream | 430283 | 30961822 ~ 30966364 (+) | True | XLOC_010028 |
| TCONS_00019947 | mRNA | upstream | 783917 | 30604387 ~ 30612730 (+) | True | XLOC_010027 |
| TCONS_00019946 | mRNA | upstream | 819511 | 30575901 ~ 30577136 (+) | True | XLOC_010026 |
| TCONS_00019953 | mRNA | downstream | 109585 | 31511739 ~ 31517227 (+) | True | XLOC_010033 |
| TCONS_00019954 | mRNA | downstream | 140491 | 31542645 ~ 31547800 (+) | True | XLOC_010034 |
| TCONS_00019956 | mRNA | downstream | 400049 | 31802203 ~ 31813015 (+) | False | XLOC_010036 |
| TCONS_00019957 | mRNA | downstream | 400049 | 31802203 ~ 31813018 (+) | False | XLOC_010036 |
| TCONS_00019958 | mRNA | downstream | 402436 | 31804590 ~ 31812889 (+) | True | XLOC_010036 |
| TCONS_00019951 | other | upstream | 425490 | 30970501 ~ 30971157 (+) | True | XLOC_010029 |
| TCONS_00019939 | other | upstream | 1315986 | 30080543 ~ 30080661 (+) | True | XLOC_010021 |
| TCONS_00019938 | other | upstream | 1359954 | 30002752 ~ 30036693 (+) | False | XLOC_010020 |
| TCONS_00019912 | other | upstream | 2180287 | 29216274 ~ 29216360 (+) | True | XLOC_010005 |
| TCONS_00019905 | other | upstream | 2377509 | 29016936 ~ 29019138 (+) | True | XLOC_010002 |
| TCONS_00019955 | other | downstream | 232316 | 31634470 ~ 31634595 (+) | True | XLOC_010035 |
| TCONS_00019961 | other | downstream | 426884 | 31829038 ~ 31836487 (+) | True | XLOC_010037 |
| TCONS_00019968 | other | downstream | 520633 | 31922787 ~ 31923924 (+) | True | XLOC_010039 |
| TCONS_00019985 | other | downstream | 790043 | 32192197 ~ 32196767 (+) | True | XLOC_010050 |
| TCONS_00019992 | other | downstream | 1270666 | 32672820 ~ 32672936 (+) | True | XLOC_010055 |
