RNA id: TCONS_00019953


Basic Information

Item Value
RNA id TCONS_00019953
length 1778
RNA type mRNA
GC content 0.45
exon number 14
gene id XLOC_010033
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 31511739 ~ 31517227 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGAGCAAAGCATGCTGGGAGCGGGACGTTTGCGCCACACTGTAAACAAGAGGATATAAAACCCAGAGCTCAGTGCATTCTGTGCAACTCCAAGCTTGAAGAAGCAATTAAACAGGATCTACTCAAATATTTCAGCACACTAGCCTTTTACAGCAACTGTAATAACCATGGTACTGGAGGACTCCGAGAGCAGCGTCTTTGAGCTGGACATTACTGAGGATGATGTGGAGACCTCCTTTGGAAGGGTGCATTGCACCATGAAGGGTGTCCCGAAGGGCAACCGTCCCACCATCCTGACCTTCCATGACATTGGACTGAACCATAAGAGCTGTTTTGAGTCAATGTTTCATCACAAAGACATGCATGAGATCTTGCAACACTTCGCTGTGTGCCATGTTGATGCCCCGGGACAGCAGGAGGGTGCCAGCACGCTCTCCACTGACTATACCTACCCTTCAATGGATCAGCTTTCTGAGAGCCTACCAATGGTCCTCAATCATTTTGGTCTGAAGAGTGTGATTGGAATGGGGGTCGGAGCTGGAGCCAATATCCTCGCCCGCTTTGCACTAAAACATCCAGACATGGTTGAAGGTCTTGTTCTGATTAATATGAGCACTCAGGCAGAGGGCTTCATGGACTGGGCAGCACAAAAGATTACAAGCTGGACTCACGCTCTCCCTGATACTGTCATTTCACACCTGTTTGGGAAGGAGGAGATCCACAACAATCACGAACTGATCGCAACCTTCCGTCAGCTCATCACGAACAACATTAACCAGTCCAACCTGCAACAGTTTGTCAAGTCCTACAAAAGCCGAAAGGATCTGGAGATTGAGAGACCTGTACAAGGAGGAAACGTTAATACAAAAACCCTGCAgtgtCCAGCTTTGCTCATAGTGGGTGATAATTCCCCAGCTGTGGATGCTGTAGTTGACAGCAACTCCAGAATGAATCCAACAACGACCACTTTTCTTAAGATGGCTGACTGTGGTGGCCTGCCTCAAGTTGATCAGCCTGGCAAACTGATTGAAGCTTTCAAATATTTCATCCAGGGCATGGGCTACATGCCCTCTGCCAGTATGACCCGTCTGGCTCGATCTCGTACGGCCAGTAACTCCTCCAACCGAACCCGCAGCGGCACAACGGACGAGCAGCGCGGACGTTCCCACACCGATGTGTCCATGGAAAGCGCCTGTGTGGAGCACAGTTCATCGGGTCACTCAGTTTCCGTCGAGTTGACCTGCTGAACTTGAAAACACGCCTCAGCAGTTTAATCTGGAATCAGAAGCTGATTAAAATGTTTCAACATTGGTGTTTATCACAAGGGATATTACAGTAGCGATAGCCCTCAAAGAgcatacattttacacatatGGCTACTTTAAATATCCTATTCTGAACCATTGAACAGTTGTTTTCCTACAATGTgcaatatgtaatattttatacTGATTGTGTAAAGAGGGCTTATTTTACATGTACAGTTTGCTGTGAGAAAGTATAAGCTagttgtgtattttaaaatgaggagtgtgtatgtgaatgaatgCCTGGGGgagttttttttatacacaatttaTTACTGCATTAACTCACCTGTAATTGATAGTGTCATATGCCTGATAGTAATGTTTAGTGTTAGTTTAgaaagacagctgtttacatcacACTTGACATTTCTGAATCATTTCTGGTTGTGCAAGACTTCAGTGAGATTTATATGAATGTAGTAAGATTGTATTTTACTGTATCAATAAAATATAACTAATAACCTATAAA

Function

GO:

id name namespace
GO:0032287 peripheral nervous system myelin maintenance biological_process
GO:0042127 regulation of cell population proliferation biological_process
GO:0048538 thymus development biological_process
GO:0045576 mast cell activation biological_process
GO:0045580 regulation of T cell differentiation biological_process
GO:0007165 signal transduction biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1648 Acts upstream of or within regulation of T cell differentiation and thymus development. Predicted to be active in cytoplasm. Is expressed in epiphysis; optic vesicle; pro-T cell; retina; and thymus. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 4D. Orthologous to human NDRG1 (N-myc downstream regulated 1).

Ensembl:

ensembl_id ENSDART00000049420

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021726 lncRNA upstream 376308 31121756 ~ 31135431 (+) True XLOC_010031
TCONS_00021725 lncRNA upstream 383655 31121756 ~ 31128084 (+) False XLOC_010031
TCONS_00021968 lncRNA upstream 417159 31090998 ~ 31094580 (+) True XLOC_010030
TCONS_00021966 lncRNA upstream 1180858 30329863 ~ 30330881 (+) False XLOC_010024
TCONS_00021969 lncRNA downstream 443681 31960908 ~ 31985059 (+) False XLOC_010041
TCONS_00019972 lncRNA downstream 443689 31960916 ~ 31970381 (+) True XLOC_010041
TCONS_00021970 lncRNA downstream 575485 32092712 ~ 32095588 (+) False XLOC_010047
TCONS_00019987 lncRNA downstream 749892 32267119 ~ 32270270 (+) True XLOC_010051
TCONS_00021971 lncRNA downstream 761772 32278999 ~ 32314568 (+) False XLOC_010052
TCONS_00019952 mRNA upstream 109585 31396647 ~ 31402154 (+) True XLOC_010032
TCONS_00019948 mRNA upstream 505050 30933044 ~ 31006689 (+) False XLOC_010028
TCONS_00019949 mRNA upstream 545159 30959423 ~ 30966580 (+) False XLOC_010028
TCONS_00019950 mRNA upstream 545375 30961822 ~ 30966364 (+) True XLOC_010028
TCONS_00019947 mRNA upstream 899009 30604387 ~ 30612730 (+) True XLOC_010027
TCONS_00019954 mRNA downstream 25418 31542645 ~ 31547800 (+) True XLOC_010034
TCONS_00019956 mRNA downstream 284976 31802203 ~ 31813015 (+) False XLOC_010036
TCONS_00019957 mRNA downstream 284976 31802203 ~ 31813018 (+) False XLOC_010036
TCONS_00019958 mRNA downstream 287363 31804590 ~ 31812889 (+) True XLOC_010036
TCONS_00019959 mRNA downstream 310275 31827502 ~ 31836739 (+) False XLOC_010037
TCONS_00019951 other upstream 540582 30970501 ~ 30971157 (+) True XLOC_010029
TCONS_00019939 other upstream 1431078 30080543 ~ 30080661 (+) True XLOC_010021
TCONS_00019938 other upstream 1475046 30002752 ~ 30036693 (+) False XLOC_010020
TCONS_00019912 other upstream 2295379 29216274 ~ 29216360 (+) True XLOC_010005
TCONS_00019905 other upstream 2492601 29016936 ~ 29019138 (+) True XLOC_010002
TCONS_00019955 other downstream 117243 31634470 ~ 31634595 (+) True XLOC_010035
TCONS_00019961 other downstream 311811 31829038 ~ 31836487 (+) True XLOC_010037
TCONS_00019968 other downstream 405560 31922787 ~ 31923924 (+) True XLOC_010039
TCONS_00019985 other downstream 674970 32192197 ~ 32196767 (+) True XLOC_010050
TCONS_00019992 other downstream 1155593 32672820 ~ 32672936 (+) True XLOC_010055

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_08990622_08995041.mRNA True 1784 mRNA 0.43 13 CI01000027 8990500 ~ 8995662 (+)
bowfin (Amia calva) AMCG00021719 True 3693 mRNA 0.42 17 CM030130.1 26701108 ~ 26718508 (-)