RNA id: TCONS_00019964


Basic Information

Item Value
RNA id TCONS_00019964
length 4538
RNA type mRNA
GC content 0.37
exon number 4
gene id XLOC_010039
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 31921812 ~ 31927522 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTACAGATTCACTTGAATAGTAAACACAGATATTCAATAAAATACTTGTCTCACCTTCGCCCAGTTCTGAATATATATGTGTTTTAAACCCTACGCATATATTCTACATCATCTTATTGTAAGTGACCAACAGAGGGAAGCAAATCCCTCATGAAGCTTTCCCTGAACACACTACCGAATGCACACGCAAAGCTTTGTGGGTTCTGTAGTTTAAATGGTGGGTATAAGTTTCCGGGAAGGCCGGATGCACGCTCTCTTTAGTGTTCGAGCCTGACACGGACAGGTAATGGCGGCTTTAATGTCCCTTTTCAGCTATAAATTTCTACTTTACGCATGCGTAATATGTACGATTAAGTAATATTTAATGTTCCCTTACGTAAGGTAACAGATGTACGTATTAATTTCTTAACTAGTTGAGTACATAATGCCGAGAAAAGAGCTTTATTGCAGTTAACGTGTTTCCACAAGGCGCGTTCAGGCCTAGCAGCAATGTTAGCCTGAGGTGAAACCGCGTGCTACCTCTACATATAAATGACTCGCCGGGattgctaatatatatatttatatgaagaaATCAAAATTTATAACGTGAGGACGAATGTGCCATTATACTATGTTCTGTTGAGAAGGAAGCGCTTTTCAGTGTTTGATGTCAAAGCTAAACCGGGTTTTCGTTCCACGTTAGCTTTAATgctttttaacttaaattaaaatttacctCTAATCAAGCACacgttaattatatatatatatatatatatatatatatatatatatatatatatatatatatatatattatacatatatatatatattatacatatataaattatacGCTAAATTAATTATAAGTCTAAGTGACGTTTCACTTACATTGCAACACCTATTATTTAGCACAATGGCGTTTGTATATCCTTTGCAAATTTGAGTACCTTTTAGCAACTTCAAAGTTTTTCTTTACCTTTTTTTGTTCAGGCGTCAATAAGTCGCCATGCCGGTTGCCAAGACTTGGGTTTGCAGTAAGACGTACGTCACCCCAAGACGTCCTTTTGAGAAGTCACGTCTTGACCAGGAGTTAAGACTCATTGGTGAGTATGGTCTCAGGAATAAGAGAGAAGTCTGGAGGGTGAAGTTCACTCTGGCCAAAATCCGCAAGGCTGCCAGAGAGCTGCTCACTCTGGATGAGAAGGATCCTAAGCGTCTCTTTGAAGgtaaTGCTCTGCTCAGGCGTCTGGTGCGTATTGGAGTGCTGGATGAGGGAAAGATGAAGCTCGATTACATTCTGGGCCTGAAAGTGGAGGATTTCTTGGAGAGGAGGTTGCAGACTCAAGTCTTCAAGCTTGGGCTGGCCAAGAGTATCCACCATGCACGTGTGCTCATTCGTCAGAGGCACATCCGGGTGCGTAAGCAGGTTGTGAACATCCCCTCCTTTGTGGTGAGGCTGGACAGCCAGAAACACATCGACTTCTCCCTCCGCTCTCCATATGGTGGTGGCCGTCCTGGCCGCGTCAAGAGAAAGAACGCCAAGAAAGCCCAGGGTGGTGGTGGAGGCGGTGATGATGAAGAGGAAGATTAAACTGTTTCCTCTTAAAGAGGTGGAGGGACTCAGCAGTGCTTGCTCTCTCTTCTCCCTCAAGTTTTCAATAAAAATGGTTCATTCCCAATTTATTtgtcctgctgctttcaaacTGATCTACTTCAAGTAACTACCAATAATGGCATTTTACAATCGATTTACCTTAAACAAATTATGTAATTTAACAGTTGCACAAATGCTCAAAGGTTTCAAACCAACTCGAGTGTATGTTGACAACCCACTTGAGTAACTCGAGTTCAACCTAATGTGCAATAAAACACAACATGACAGCCAAAACTCAAGAAACTGATACCTAGTATCCCTAGTgggttaaacattttttaattcatttatttttgtagtcATATTTGACTGTCATCATTTGCTGGTCaaaatgaaatgcatttaattacAGACTTAAATACAGAAAAACTGCAAACATCTAGAGGTAAAACCCAAATTTGTTTGGGTACATTGGCTGAAGCAGCCATTAAATCTAAACTCACTTCAAAGAATATATtaagataaaatattttttatttaaatcttaattttttaGATTGCACTTTCGGCTAGGAACTTAATACATTAGTTGTAATCTATCTTCATTGTGCTGATGATAAGTGGTGATAATCTTGGAGTGTGCAGTAGGCTTTTTTTATGTGCTCCGGCTTAAGAAATGTCATCCATCTTCTACAGATCGTCCTGGGGACTGATTTGTCCTCTTGTCTCAGTGTTGCTTGTCTGATCACTGTGAGTGAggtaaaatatgaaattatatgTAACTTCAAATTGTAttcaatttattaatattaatacatgattgttttaaagatgtttacCTTTCACCATCCTTTTCCAGTGTTTAAACAAGGAAAAACAAAACGATCATATTAGCACAATcataaaatgaatttttttttgtataattaatatAACCTTAGGTATTTGCTGACCTTAGTTCGCTGTCCTGCTACAGCAGCTGCCTTTTTTGGTACTCCCAAAGTGTCAAATGAGTGGCTTCTCACCCTAATAGCTCTCTGATAACGGAGAAAGACAATAATTGATTTAATACTCATTTTAATATCAAGGCCTATTGTCTGTTGCTCTCAATAAACTTGATTTACCTTGAAGTTCTCAATGAATCCTCCACCGCCCTCTGGGGCACTTCTCCCCCCTTCAGTGAGAGGGATGCTGGACTGCGATGGTTCTCCCAGCATGCACTGGGAGCGGGAGGACAGTTCACATCGCAGTGCTTCCAAGAGAGACGAACGTGTACGTAACTGAGATGGAAGCACGAGTTTATGAAGTGAGACCATGACTAAGCttactaatatataatatataaatatgtagttcTCTCAAAATTGAACGTTTGCTAGGCCTATATATTTACCCACTGGCGTACCAGACAAGGAGTCCTTATTGAGGTCTTAATTTAAGAGTAGTCACGAAAAAACTGCTTCCTTCAGCACTTAATAACAGTTTAAAAGACATTTTGCCGAcacaaaattaatacatttaaagcaGTTGGTTCCTGAAAATAATTTAAGGTCTTGATAGGTTTGTGTAAGAAactaaacaatttaaaacaatatacACAGGCTTTTAATTTTAGCCAGCCTCAGCACTTCCGGTAAACTATCTTTCCTTTATAAAATCGCCAAGTTTAAGGTCTATTTCTTAAAAAAAGCAGTAAATTCACTGTctgatagatatacgatataaagcgGGTCTGAGAACGAACGAAGCACTATGGTAAATTCCATTTTCCCCCACcaagtctttaaaatatgaaggtTTATTTTACACCGGTATTTTTAATGAAGTTTGTGCACTAGCCTGTCCTGACAGCGCTAGTGGTTACAcgatctttcatctcgttttacgcttaaacaaataaatgaacgccGAAGTCTATTTAACTCAATGTTTTGtaactacattacaacatcaatggtGTTAAAAAGAACCTCATGTAATAGAAAACAGTTAGCctacattaagctttcaccagaagttcatcattggGTGAAAAACACCAGCTGTAGCCCATTGCCAGTaggtaatttagttttttttctgtatttttattttagtttttacaattttctttatacagtacattgacttgcattttattaattaaacatttgatGGCCTGGGAGTGggtaaataaactgtaaatattgTGAATTTATGGAACTGTCCTTATATTTTTTAGGATGTTTGGTGCCTGATTACCTCCAGTCGACTGAATTTTTCAGCCTTGTAACAAGAGATTTCAGCATTTATAAGTTTGGTCAAGAGGAACTCTCTCAAAACAGAgccctgaaaaataaaatgcagagaGACGCCTGTTGAAAATTTATAGTGTGACTTGATTGTTTTGttgatatttctttttattaatcacATCTCATCATCAATTAAATTATGTAGGTATACCCACATGTTTGATCTGAATCCACATGGTGAATAATTATACAGATATCAAAAAGGTAAAAACTATCTTACAGAAATCTAAAGCACTCTGTCATTTGTTTTTACCTCTGTAAAAATGGGTGGTGTGGGAAGGGGTGGGCCAAATGGGGGCACATCCTCCCTAGCAGTGACAGACACCTGTcaatcagaaaaaaaagcttTGAAGCAGTGGGTGCTGATAACGTATTATTTAACAATTTTCTAAtcattttttaacatgttttattttacttgaaagGATCCTCCATCTCCTCCCTCTCCCTCATTTTCTCTCTTTATCCTCCGAACTGCAATGAAACAATGCAAGAAATGGGATCTGATCACATCTGAAATGAATGGAGTGTGACCCTCCTGGTACACCAGAGCAACAATATCATTCCCAATGTGCCTTTTTCTCTGCAGCTGAGGGGAAACAGAGAAATAGGGTTGTCATTCAAGGAAAATGAAAATGATGCTTAACTTTGTTTTCTGTCCT

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0045903 positive regulation of translational fidelity biological_process
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko05171 Coronavirus disease - COVID-19
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-010724-15 Predicted to enable rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in positive regulation of translational fidelity. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS9 (ribosomal protein S9).

Ensembl:

ensembl_id ENSDART00000193733

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021726 lncRNA upstream 786381 31121756 ~ 31135431 (+) True XLOC_010031
TCONS_00021725 lncRNA upstream 793728 31121756 ~ 31128084 (+) False XLOC_010031
TCONS_00021968 lncRNA upstream 827232 31090998 ~ 31094580 (+) True XLOC_010030
TCONS_00021966 lncRNA upstream 1590931 30329863 ~ 30330881 (+) False XLOC_010024
TCONS_00021969 lncRNA downstream 33386 31960908 ~ 31985059 (+) False XLOC_010041
TCONS_00019972 lncRNA downstream 33394 31960916 ~ 31970381 (+) True XLOC_010041
TCONS_00021970 lncRNA downstream 165190 32092712 ~ 32095588 (+) False XLOC_010047
TCONS_00019987 lncRNA downstream 339597 32267119 ~ 32270270 (+) True XLOC_010051
TCONS_00021971 lncRNA downstream 351477 32278999 ~ 32314568 (+) False XLOC_010052
TCONS_00019962 mRNA upstream 52827 31853919 ~ 31868985 (+) True XLOC_010038
TCONS_00019960 mRNA upstream 84330 31827653 ~ 31837482 (+) False XLOC_010037
TCONS_00019959 mRNA upstream 85073 31827502 ~ 31836739 (+) False XLOC_010037
TCONS_00019957 mRNA upstream 108794 31802203 ~ 31813018 (+) False XLOC_010036
TCONS_00019956 mRNA upstream 108797 31802203 ~ 31813015 (+) False XLOC_010036
TCONS_00019970 mRNA downstream 15005 31942527 ~ 31960652 (+) False XLOC_010040
TCONS_00019969 mRNA downstream 15005 31942527 ~ 31960652 (+) False XLOC_010040
TCONS_00019971 mRNA downstream 15023 31942545 ~ 31960349 (+) True XLOC_010040
TCONS_00019973 mRNA downstream 87030 32014552 ~ 32026333 (+) True XLOC_010042
TCONS_00019974 mRNA downstream 101568 32029090 ~ 32050153 (+) True XLOC_010043
TCONS_00019961 other upstream 85325 31829038 ~ 31836487 (+) True XLOC_010037
TCONS_00019955 other upstream 287217 31634470 ~ 31634595 (+) True XLOC_010035
TCONS_00019951 other upstream 950655 30970501 ~ 30971157 (+) True XLOC_010029
TCONS_00019939 other upstream 1841151 30080543 ~ 30080661 (+) True XLOC_010021
TCONS_00019938 other upstream 1885119 30002752 ~ 30036693 (+) False XLOC_010020
TCONS_00019985 other downstream 264675 32192197 ~ 32196767 (+) True XLOC_010050
TCONS_00019992 other downstream 745298 32672820 ~ 32672936 (+) True XLOC_010055
TCONS_00020010 other downstream 1415629 33343151 ~ 33343265 (+) True XLOC_010067
TCONS_00020013 other downstream 1792447 33719969 ~ 33733378 (+) True XLOC_010069
TCONS_00020014 other downstream 1824580 33752102 ~ 33756379 (+) False XLOC_010070

Expression Profile

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