RNA id: TCONS_00019969


Basic Information

Item Value
RNA id TCONS_00019969
length 4293
RNA type mRNA
GC content 0.47
exon number 13
gene id XLOC_010040
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 31942527 ~ 31960652 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAAAAAGTATAGTAAACAGTATAGGAGGGCGGGGCGGGGTTTCCATCGCTTTTTTGAGCCTCATCACAATCACCGTTGTTTGAAGAATTCCAACAATACTTGCAAAGAGCAATTGTAAAGAGCGGAACTGCATTACATCGAAAACACCAGCACCGAGGTGTCATTTTCAGAGCATTGCTTCCGTTAGGAGAGTAGGAAGCCGACCGCAGAGAGTTACAAAGTTTGATTGACTGGTCGTCCATCCAGTGAGCATGGAGGCAGGAGAAGACCAGACCAACTCCAGCTCAACCAATAGCAGCGCAGCTTCAGGGGGAAACTCCCGCCCTCCTCAGATAGCTCAAATGTCTCTCTATGAAAGGCAAGCTGTTCAGGCACTGCAGGCCTTACAGAGGCAGCCCAATGCAGCTCAGTATTTCCAGCAGCTGATGCTGCAGCAGCAGATCAACAGCGCAACCTGTCAACTCCACAACCTGGCTGCTGTGCAACAGGTAAACCGCTCTCTTAGGGCACCTCTCACCCCTCAGCTCATCTTTATGCCTGGTGGTACAGCGACAGCAACTGTAGCAACGGTTGCCCAAACGCAGCCACAGCAGCAGCCACAGCAGCAGccacaacaacagcagcaacaggAAGCAACTCCCACATCTTCAAGTAGCCAATCAGACAATGATCAGGTGCAGAACTTGGCAATGCGTTGTGTGTCCACTCCTAGGGCGGCTACTGTGAAGACAGAGTTTGCAGACAGGAAGGAAACGACTGGTACATTCCCACTTAACCAGCAGACTCAGACTCCACAACAGTTTGGTCAATCAACCCAGCAGGTCCAACCACAAACTCAACCCCTTGCCAACGCCAAACTCCAGAGCTTCTCCAACACCGCCAATCCCAGCGTGCCTGCCCTCAACGTAAAGCCCACTAACCAATCcgctgttgccccacagcaagcaGGAGCTTCCTCCAACCCCCCGTCCTCCTCGCCCACTCCCTCACTCCCTCTCTCCCAGCTTCTCCTTTCTCAATCTGGCTTGCACCAAACTCGAGGTGTACCAGGTTCTACAGCCACCGTTACCCACATCCTGGTACCCACTTCTAACGTCCCCACATCTACTCAAGGTTATCCACTGGGAACGGTGGCGACCAAATCCAACATGACTGCCCAGACATTGGTGGTGCAGCCACTCCAGCAAACGGGGGCAAATCTGAGCACGGAGAAGCTAGCTCATGGTACAGGGCATGTGCCAATTCAGCCTAAAACGGCTCAGGGCCATCGGGTGCCAGTACAGATGTCCCCTCGCCACCCACCTCCCATTCTCCCAGCACCACCCAACAACGGCCAGGCCACCGCAGGTCTTCACCCTCCCCACGTCCCAGTTCAGCTGGTCGGAGCAAGGCAGAGCACTCTGGGAAACTCACAAGCGTTAGCATTGGCCCAGGCTCGAACTTGTTGCTCCCAGCAGGACGGAACAGCTGCCGTGGGAGTCAATAACCCGGGCAATGTTGTTACCATGGTTACTGCTATGGATACAAGTGGAGCTGGCATGTGCCTTAAAACAGCCCAAAGTGCCCTCCCTATCTCTCAGATGCAGACCAATCAGAGTGCAGTATTGAGTCAGGGTAATCCCGCTTCAGTCACACACTCCATGGATGGACAGAATAACTCTGGAGACTCTTTGTTTGTTCAGTCTGCACAAGCGCAGATAAAGCCTGCTATTGGTCCAATAAAAAGGAAGTCAGAGTCAGATTTGACCCATGAGATTTCGAATGAGCCAATCAGTGGAAGTCCCTCAATGCAAGACTCCGCCCCTCCTCTCTCGCCTGCTCCTTCACTGGATACAGTCCCAGAGATAGCATTCTCCTCTCCTCCTACATTGTCCCTCTCTCTGCCTCTTCCTCTCCCTCGTGGAGCAGGACAGGGCGATCGAGCACCTGTTCCACAGGCTGTGGTCAAACCTCAGGTTCTCACTCACCTCATCGAGGGCTTTGTCATCCAGGAGGGAGCTGAACCTTTCCCTGTGACCGGGCCACTGAAAGAACTTTCTGGTGCTGTTCCACCAATCCTACATCCAGAGGACATCCGCTCTGATAAGTTAAAGTGTGAATACTGTCTTAATTTTGCACCAGCCAGCCAGTTCAGAAGATCCAAGCGCTTTTGCACCATTAGCTGCTCAAAGAGgtacaaTGTGAGCTTTAGAAACCACTTACGGGCCAGTAGAGGTCTTGAGGGTGCAGAACGGCCAGCAGGGGGCCCCGTGGTCCAGGATGTTATTGCCAGACGCCGGGCTCCTCGCAGAAGCAGCTCTGAGATCGCTTGTGCTAAAATAACAGGAAGGCATCTTCCTGTAAAGTGTCGTTCAGAATCCAGTCGTTCTGATGATATCTCCAGCTGTGAGGGCGAGGAAGAGGAAGACTTCTTGTCGCTTTCCCCCAGCTCCACCTTTTCATGCCCGAGACCGACCCACTGTGGCCCTCAGCTGGATGACACAGCACCCGGCGGACTCCCAGTGGACGAAAACCACTTCCTATCTGGCAACCCTGCTGACTGGAGTGTGCAGGAAGTGTGTCAGTTCATTTCATCTCTTCAAGGTTGTGAGGACCTGGCATCCCAGTTCCTGTCCCAGGAGATCGATGGGCAGGCGCTGATGCTGCTCAAGGAAGAGCATCTCATGTCCACCATGAACATCAAACTCGGACCTGCCCTCAAAATCTGCGCTTCTATCAACAGCCTAAGGGATTAAACGGAGAGCAGAGCTTCATATTTCCATCACCAGCCTGAGAAACTGAAACCTTTGGTTATGGATCCAAAGATTGACCTAGAGATTAATCAAAATCCACAAGGAAGAATGACATCCGATGCCTTATTAAAAGCAGATAgttcagtatttttgttttgatgtgaAAGCCTGGAGTaatcgttttattttttttaccatttgcTAGATCGAAGTTGACCGGTTCTCTCGTAAATCTGTCCTGTTTGCTAACAGTTCATgagaaaataacaaaacaaaaaaaaaaacagcataaagaTGATTATGTGTACTCCTTAAATGACAGAATCAACAGAATACGTCTCGATCTTGAATTTTGAATGTGTTACATGTATAATATCCGGGAGGTGCTTGAATGAGCATATGCATCTTGCGTCAGTTGACTAAATTTGTAGTCTTTATCTCTGTATGTTTGTGTCCTGTTGTCTTATACAATAATAATCAAAGTATGACTCGATAATGACATTATAGACAGTAATCAATGTTATTCCTGTAGTGCTTTTGACTATCAAAGTCAACGAAAAAAATGTGAATAAGTTGCCTTTTTAATAATAACGATGTTGCCTGAAACGGTTCTTTCTCCAGGGCTTCCCCAAGCTTCATTTCACCACCTTTGTTGAACAGAAAatggttattttttgtttgtcagcACTTGACTAACGGGTTATTGGTTGTCTTCAGTGTGCCATTTAGGACTTTAACACAATTAGATTCCCATACACTAAAATAACCAGTCTGAGTAGTGCGTCTGCACCCACATAAATCACAATTTCAGCCGTTAGTGATCTACTACAGCTTGCTCTTTGTTTCACAGCTTTTATTGGTTCAGAGACTGTGAGAGATGGCAAATGTGTAGTTTCCTTACTATACAGTATTACTGAATGGAAGTAGTTTATTTTCTCTTAATCGCAGACCGAAGGAGTGATTGGATAACTGATCCAAGAACaacaaattgctttttttttctacagtagaTGATTGTAGCACacatttaatttgcattaaaGAAGTAGTGTCGTTCTTCTTGGGTACACTTTACCAGCTTCATAGAAGAGTATTAGTAGCTTTACCTGAGAGCCTTACAGCAGCGGAGAGCAGGTATGATgaggtgtgtgaatgtgaatgagagAAGGTGCCAATGAGAAAGCCGTGCTTGTGCTCTAAACATATGGTTCCTTTGTGTGCATAAGTATGAATAAAGGTGCTGTGATATTCATGTCAAGTCTGTCAAGTCTTTACTGCTTAGCCTGTTAAGAGTTTGTCAGTGAATAatgcataattaataataagtgaataatgataatatttttttttaaatctgtaatttaagtGCTGATTTTTAGCAATCCTGTATCAATCCTTTTTATCGGTGAACACAGTAGTACAGATGAGAAACCAATTCCTCCCAATGATATTTTGtgaaatgtacactgtaaaagtcCAAATATTTTGTTACTATACCTTATTTGAATAAGTTAATaagtttaactttattttaagtcaGTTGAATAAAATTGAAGACTA

Function

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0035102 PRC1 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-081022-39 Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to be part of PRC1 complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly 11. Orthologous to human PHC1 (polyhomeotic homolog 1).

Ensembl:

ensembl_id ENSDART00000188334

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021726 lncRNA upstream 807096 31121756 ~ 31135431 (+) True XLOC_010031
TCONS_00021725 lncRNA upstream 814443 31121756 ~ 31128084 (+) False XLOC_010031
TCONS_00021968 lncRNA upstream 847947 31090998 ~ 31094580 (+) True XLOC_010030
TCONS_00021966 lncRNA upstream 1611646 30329863 ~ 30330881 (+) False XLOC_010024
TCONS_00021969 lncRNA downstream 256 31960908 ~ 31985059 (+) False XLOC_010041
TCONS_00019972 lncRNA downstream 264 31960916 ~ 31970381 (+) True XLOC_010041
TCONS_00021970 lncRNA downstream 132060 32092712 ~ 32095588 (+) False XLOC_010047
TCONS_00019987 lncRNA downstream 306467 32267119 ~ 32270270 (+) True XLOC_010051
TCONS_00021971 lncRNA downstream 318347 32278999 ~ 32314568 (+) False XLOC_010052
TCONS_00019964 mRNA upstream 15005 31921812 ~ 31927522 (+) False XLOC_010039
TCONS_00019963 mRNA upstream 15005 31921812 ~ 31927522 (+) False XLOC_010039
TCONS_00019965 mRNA upstream 19024 31922065 ~ 31923503 (+) False XLOC_010039
TCONS_00019966 mRNA upstream 19024 31922156 ~ 31923503 (+) False XLOC_010039
TCONS_00019967 mRNA upstream 19024 31922262 ~ 31923503 (+) False XLOC_010039
TCONS_00019973 mRNA downstream 53900 32014552 ~ 32026333 (+) True XLOC_010042
TCONS_00019974 mRNA downstream 68438 32029090 ~ 32050153 (+) True XLOC_010043
TCONS_00019975 mRNA downstream 90920 32051572 ~ 32058276 (+) True XLOC_010044
TCONS_00019976 mRNA downstream 99133 32059785 ~ 32080875 (+) True XLOC_010045
TCONS_00019977 mRNA downstream 121707 32082359 ~ 32085778 (+) False XLOC_010046
TCONS_00019968 other upstream 18603 31922787 ~ 31923924 (+) True XLOC_010039
TCONS_00019961 other upstream 106040 31829038 ~ 31836487 (+) True XLOC_010037
TCONS_00019955 other upstream 307932 31634470 ~ 31634595 (+) True XLOC_010035
TCONS_00019951 other upstream 971370 30970501 ~ 30971157 (+) True XLOC_010029
TCONS_00019939 other upstream 1861866 30080543 ~ 30080661 (+) True XLOC_010021
TCONS_00019985 other downstream 231545 32192197 ~ 32196767 (+) True XLOC_010050
TCONS_00019992 other downstream 712168 32672820 ~ 32672936 (+) True XLOC_010055
TCONS_00020010 other downstream 1382499 33343151 ~ 33343265 (+) True XLOC_010067
TCONS_00020013 other downstream 1759317 33719969 ~ 33733378 (+) True XLOC_010069
TCONS_00020014 other downstream 1791450 33752102 ~ 33756379 (+) False XLOC_010070

Expression Profile

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