RNA id: TCONS_00021969


Basic Information

Item Value
RNA id TCONS_00021969
length 525
lncRNA type read_through
GC content 0.49
exon number 5
gene id XLOC_010041
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 31960908 ~ 31985059 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTGCCCACGCTCCCACGTGCGTGCCTGCTTCTCATCGTGCCTTACGTCAGATAAACAACACAGTGACATAGACAGAAACGGAcgagctcattagtcaaaaataccaaGATCTTCACTGTAATTACCACTTCCTGACGTCCTCACGTACAAGTCGTCTAAACCCCAGAGTTTTGCAGTACAAATCCTGCTGACCAACACATTTCGAGCCTTTAAGTTGCAGTGGTGAAGATCTTTGCCATGGAGAAAGTCCTACAGGGAAAGAAGAATGAAAGTTTCTCCTAGTCCTGGATACTCGACTGGAAGCAGGTTGCAGGCGTTCCACCTTCTCTGGACAGAACCTCAGCAGCATAATGAATAGCAGCGTGATCAAGAACATCATGAAGAAGATCACCGACATGATCTACTTACCACACAGCGCATCTCCAGCCTCACATTCAGAAGATGCAGCGCTGGAAGAGGCCGCCATCCTGCACGGATACCAAAAGAGCTCCCTAGACACCTTCTCCACCAGATCATCACCATCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021726 lncRNA upstream 825477 31121756 ~ 31135431 (+) True XLOC_010031
TCONS_00021725 lncRNA upstream 832824 31121756 ~ 31128084 (+) False XLOC_010031
TCONS_00021968 lncRNA upstream 866328 31090998 ~ 31094580 (+) True XLOC_010030
TCONS_00021966 lncRNA upstream 1630027 30329863 ~ 30330881 (+) False XLOC_010024
TCONS_00021967 lncRNA upstream 1630027 30330280 ~ 30330881 (+) True XLOC_010024
TCONS_00021970 lncRNA downstream 107653 32092712 ~ 32095588 (+) False XLOC_010047
TCONS_00019987 lncRNA downstream 282060 32267119 ~ 32270270 (+) True XLOC_010051
TCONS_00021971 lncRNA downstream 293940 32278999 ~ 32314568 (+) False XLOC_010052
TCONS_00019989 lncRNA downstream 319795 32304854 ~ 32365571 (+) False XLOC_010052
TCONS_00019988 lncRNA downstream 319873 32304932 ~ 32314568 (+) False XLOC_010052
TCONS_00019970 mRNA upstream 256 31942527 ~ 31960652 (+) False XLOC_010040
TCONS_00019969 mRNA upstream 256 31942527 ~ 31960652 (+) False XLOC_010040
TCONS_00019971 mRNA upstream 559 31942545 ~ 31960349 (+) True XLOC_010040
TCONS_00019964 mRNA upstream 33386 31921812 ~ 31927522 (+) False XLOC_010039
TCONS_00019963 mRNA upstream 33386 31921812 ~ 31927522 (+) False XLOC_010039
TCONS_00019973 mRNA downstream 29493 32014552 ~ 32026333 (+) True XLOC_010042
TCONS_00019974 mRNA downstream 44031 32029090 ~ 32050153 (+) True XLOC_010043
TCONS_00019975 mRNA downstream 66513 32051572 ~ 32058276 (+) True XLOC_010044
TCONS_00019976 mRNA downstream 74726 32059785 ~ 32080875 (+) True XLOC_010045
TCONS_00019977 mRNA downstream 97300 32082359 ~ 32085778 (+) False XLOC_010046
TCONS_00019968 other upstream 36984 31922787 ~ 31923924 (+) True XLOC_010039
TCONS_00019961 other upstream 124421 31829038 ~ 31836487 (+) True XLOC_010037
TCONS_00019955 other upstream 326313 31634470 ~ 31634595 (+) True XLOC_010035
TCONS_00019951 other upstream 989751 30970501 ~ 30971157 (+) True XLOC_010029
TCONS_00019939 other upstream 1880247 30080543 ~ 30080661 (+) True XLOC_010021
TCONS_00019985 other downstream 207138 32192197 ~ 32196767 (+) True XLOC_010050
TCONS_00019992 other downstream 687761 32672820 ~ 32672936 (+) True XLOC_010055
TCONS_00020010 other downstream 1358092 33343151 ~ 33343265 (+) True XLOC_010067
TCONS_00020013 other downstream 1734910 33719969 ~ 33733378 (+) True XLOC_010069
TCONS_00020014 other downstream 1767043 33752102 ~ 33756379 (+) False XLOC_010070

Expression Profile

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