RNA id: TCONS_00019973


Basic Information

Item Value
RNA id TCONS_00019973
length 2251
RNA type mRNA
GC content 0.43
exon number 9
gene id XLOC_010042
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 32014552 ~ 32026333 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAACATATGCGGTAGTAGGAAGTGGTGAATGAGGAAAGAACACGCCAGTGCGCGGGCGGTTAAAGGGGACTGCTGGACAATATTTTATCCGCCACAATAAACCGTCTTTTAAAGCACAACTCCATACTTCATCGCTAAGGATGTCACCGGATGAATTAGTCTATCTAGGAATCCTTGCTGCAACAATACCTGTGGGATTCCTCTTCCGCTACCTAAGTCCTCCAGTCAAGCAGGGGGCAGCGTTGCTTTTAGGTTTGATCATTTCTATCGCAACCTGTGGGATCCACACCCTTCACTCACTATGCACAGTGTTAGGAACATGGATAATTATCAAAATCAACTGGAGAAGTGCTCCTGCTCTGTCTTTGGCCTGGACGTTTCTATATCTTCTCTTTTTCCGTTTGGTCACCTGGTTTGGCCTTCCTCAGCCCACACCCTTTGCCAATGCCATTCAGCTTCTTTTGACATTaaagATGGTCAGTTTAGCCAATGAGGTTCAAAGTTATCACTTGGAGAGGAAAAAGGAAGTGAGCACCTTCACCAAGTCTCCAGTAGTGGCAGGGCTTTCCCATGAGCCTTCACTCTATGATATTATATCATACAGCTACTGCTATGTGGGCATAATGACAGGTCCCTTTTTCCGGTATCAGACATATGCAGACTGGTTGCAGCAGTCAAGTCCACTGTCTCTGCCGGGGAAAGAGCCGTGTCTGCAGAGGCTGAAGATGGTTCCTGTTTATGGACTTCTATTTATTGCCGTCAACTCTGTCTTTCCTTTGTCGTATGTGCGTACTGAAGATTTCCTGGAGCACAACTACTTTTACAGGTTTTTCTACATGGTGGCAATCTTCTTTGTATTCCGGATGCGTTTCTACTCTGCGTGGTGTGGAGCAGAAGCAGGCTGCATCAGTGCAGGACTAGGCTGTTACCCACAGGGGGCGTTGTCCAAACCAGGAGGAGGACCAACAGTGAAATATAGcCCTGATCCTGAAACAGCAGTCGAGTATGACTTTAAAACGATCCAGAACATTGACTGCTATAACACTGATTTCTGCGTGAAGGTCCGGCATGGTATGCGCTACTGGAATATGACAGTACAATGGTGGCTTCACCACTACTTCTACCCAAACGCCCCATTCAGAGCTTATGCCCTCAGGGCTGGGTGGACGATGTTAATCAGCGCTTACTGGCATGGCCTTCATGCTGGTTACTACCTCTCGTTTCTCACCATCCCACTGTGCATCGCAGCCGAAACGGCAATGGAAGCATCAGTCAGAGCCCGTCTGGGACCAGCAGGCCAGAATATTTTCGACTGGATCCACTGGTTCCTCAAGATGAGGGCTTATGATTACATGTGCATGGGCTTTGTGCTCCTGAAGGCCAGCGACACTATCAGCTATTGGAGCTCCATTTACTTCGTAATTCACATCATCGCCATTGTTTGTATTGCAGTAGGACAGTTTATGAaaggagggagaaagagagagaagagagaacgaGGTGAAGGAGAGAAAGAGGATGCGGTCAGAGAGAAGGCTGAGTGAAGCAAACATGTGATGTGATTATGCTGATTACTGGAGAGGTGGTATGTTtacacacaaacaacaaaaacattttccaACATGCACTGTAATAGCCATGAACTGCCATTTAAATGTATtgtgttaacaaaacaaaaaacagcaacaGTTGTGTGTATTGGACCCAGGGACGTCAGTCTTTGTTTTATTAACGGTTTCTGTCATTTTCAGAATTCTGATGGTAgcgtttattttgttattacacACTGTTTTGTCAGCAGTTCAACATTATATATTCATCTATAACTAGTCAGTattgtttaaattatattattattgctcTAAGATGCTTTAAACAATTGGAAAAGGGTTTGTATTGTATTTCAGTAGTAATTTTGTTTGTGTTGATCAGTGACCCTGGGACTCCATTTCATCTCCCACACACAGTACTTATAACCGAATCCATCCGTTTACAAAAAACCTGATGAATGTTAGATTCATATCACTACCTAGAGCACAAATTAGTAGAGATTTCCTCTTTGTGTAATTTTGTTATTGAGGCAAAACAGTTTTTATTAGAAAAAGGGGTTTATTTAAGCTGATCTGCCTTGTTTTTCATCAATTCTAAATGGTGGATTGAGGATCCATTGATGGTTATGTGTCATATATcaatattgttactattattatacaAAGAATGTGAATAGAGCtcatttttatataaagtaa

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006661 phosphatidylinositol biosynthetic process biological_process
GO:0030258 lipid modification biological_process
GO:0008654 phospholipid biosynthetic process biological_process
GO:0044233 mitochondria-associated endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0071617 lysophospholipid acyltransferase activity molecular_function

KEGG:

id description
ko00564 Glycerophospholipid metabolism
ko01004 Lipid biosynthesis proteins

ZFIN:

id description
ZDB-GENE-040426-1516 Predicted to enable O-acyltransferase activity and lysophospholipid acyltransferase activity. Predicted to be involved in glycerophospholipid metabolic process; lipid modification; and regulation of triglyceride metabolic process. Predicted to act upstream of or within phospholipid biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in membrane and mitochondria-associated endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human MBOAT7 (membrane bound O-acyltransferase domain containing 7).

Ensembl:

ensembl_id ENSDART00000047570

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021969 lncRNA upstream 29493 31960908 ~ 31985059 (+) False XLOC_010041
TCONS_00019972 lncRNA upstream 44171 31960916 ~ 31970381 (+) True XLOC_010041
TCONS_00021726 lncRNA upstream 879121 31121756 ~ 31135431 (+) True XLOC_010031
TCONS_00021725 lncRNA upstream 886468 31121756 ~ 31128084 (+) False XLOC_010031
TCONS_00021968 lncRNA upstream 919972 31090998 ~ 31094580 (+) True XLOC_010030
TCONS_00021970 lncRNA downstream 66379 32092712 ~ 32095588 (+) False XLOC_010047
TCONS_00019987 lncRNA downstream 240786 32267119 ~ 32270270 (+) True XLOC_010051
TCONS_00021971 lncRNA downstream 252666 32278999 ~ 32314568 (+) False XLOC_010052
TCONS_00019989 lncRNA downstream 278521 32304854 ~ 32365571 (+) False XLOC_010052
TCONS_00019988 lncRNA downstream 278599 32304932 ~ 32314568 (+) False XLOC_010052
TCONS_00019970 mRNA upstream 53900 31942527 ~ 31960652 (+) False XLOC_010040
TCONS_00019969 mRNA upstream 53900 31942527 ~ 31960652 (+) False XLOC_010040
TCONS_00019971 mRNA upstream 54203 31942545 ~ 31960349 (+) True XLOC_010040
TCONS_00019964 mRNA upstream 87030 31921812 ~ 31927522 (+) False XLOC_010039
TCONS_00019963 mRNA upstream 87030 31921812 ~ 31927522 (+) False XLOC_010039
TCONS_00019974 mRNA downstream 2757 32029090 ~ 32050153 (+) True XLOC_010043
TCONS_00019975 mRNA downstream 25239 32051572 ~ 32058276 (+) True XLOC_010044
TCONS_00019976 mRNA downstream 33452 32059785 ~ 32080875 (+) True XLOC_010045
TCONS_00019977 mRNA downstream 56026 32082359 ~ 32085778 (+) False XLOC_010046
TCONS_00019978 mRNA downstream 56042 32082375 ~ 32090672 (+) False XLOC_010046
TCONS_00019968 other upstream 90628 31922787 ~ 31923924 (+) True XLOC_010039
TCONS_00019961 other upstream 178065 31829038 ~ 31836487 (+) True XLOC_010037
TCONS_00019955 other upstream 379957 31634470 ~ 31634595 (+) True XLOC_010035
TCONS_00019951 other upstream 1043395 30970501 ~ 30971157 (+) True XLOC_010029
TCONS_00019939 other upstream 1933891 30080543 ~ 30080661 (+) True XLOC_010021
TCONS_00019985 other downstream 165864 32192197 ~ 32196767 (+) True XLOC_010050
TCONS_00019992 other downstream 646487 32672820 ~ 32672936 (+) True XLOC_010055
TCONS_00020010 other downstream 1316818 33343151 ~ 33343265 (+) True XLOC_010067
TCONS_00020013 other downstream 1693636 33719969 ~ 33733378 (+) True XLOC_010069
TCONS_00020014 other downstream 1725769 33752102 ~ 33756379 (+) False XLOC_010070

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_09349353_09352981.mRNA True 1484 mRNA 0.47 8 CI01000027 9349353 ~ 9353150 (+)