RNA id: TCONS_00019974


Basic Information

Item Value
RNA id TCONS_00019974
length 2810
RNA type mRNA
GC content 0.43
exon number 16
gene id XLOC_010043
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 32029090 ~ 32050153 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAATTTGCCTCTGTAACTATGCACTACTGAGTACTGCTATTTTGGTATTGTGTTGTTTGTCGTCTTCATTTTATGTGGTGTCCATCTGATTTCTGATGGAGCTAAGAGAATTCAACGATGTAGTACATCCACCTCCAGACTACCCTAGTCCCGATGTCTCCCACCATTCCCTGAGGTTACGGACAGTTGCGGCTCCGGCTCCTGCTCAGCAGAGCAGCGGAGTTCAGTTTGACTGGGCTTCTCCTCCTCCTGAAGATGCTGAAGACTCCAGTGAAACACGTAACCTTCGCGAGCTGCCGCTGCACATGAGTCTAAAGAGAGCAGTAAGGCAGGTGCAGCAGATGAGAGTTCCAGTTGTGTCCAGCTCTTGGAATATTAAACATTCACAGACATTTCGGCGTTTCTGTGAGGTGGCCAAAAATATTCTCAGCTATTTTGTTTTGTGGAAGAGGGGGATCCAAAGAATAGGAGGTCACTTTGGTGGAGGAGTCCAGTCCTACTTTCTATTCCTGAGATTTCTGGTGATTCTCAACTTTCTGTCCTCTTTGTTAATCGCAGCGTTTGTGCTCATTCCCAGCATTGTGTTTCGCTCCTTGAACTTCAACTCCACCTCCAACATCACTATAGTCAACACAACAGGTTTAGAGACCTGCATGCAGTATGATCCAAAACCTGATGCTCTTATGGTGTTCTTCAACTACTTTCTGGACCTGGTTTCAGGCACGGGTTTTATGGAATATTCATACCTTTTTTATGgctattataataatacaatgatTGAAAGCGATGGCTTCTCTTACAACATCCCTCTGGCCTACCTGTTGACAGCAGCTTTCTACTTCCTCTTCTGCTTCTTTTGTATAATTATTAGAATGGGTGGTACGGCTCGTGTTGTTGTAGAGACGGGTGCAGGAGCAGCCGGGGGTTACTGTATGCTGGTGTTTACAGGATGGGATCACGGTCTTCAAGGAGACCGCGCTGTAAAGCTTAAACAAAACAACGTTCGCTACAGGTTACAGGTGGATTTAGAAGAGGAGAGGCTTAAAAAGAAGGCTGCCTCGCTGACTTTGGGCCAAACAGTCTCTCTCTATGCTCTTCGAATTTTCCTTAATCTAATAGTCTTAACACTCATCGTTGCAACCTTCTTTGGCATTGCTAAGGCAACACAGTTCAGCCAGTCTATGAAAACAACAGGATTTACGGGGCTACTGCTGCAGTACTTACCCTCCATGGTCATAACAGCAAGCAATTTTGTGGTGCCTTTACTCTGTGACAAGATTGCATTACTGGAAAAGTATTCCCCCAGTACCACGGTCATCCTAGCCTTGCTCAGGGCAGTGTTCTTGCGTTTGGTCAGTTTGGGTGTTTTGCTGTACACTCTATGGGAGCAGATAACCTGTAAAGGAGAGATTGGCAGTGATGACTGTAAACTCTGCGGTTATTATTATAACCAATACAAGTGCTGGGAGACGCGAGTTGGCCAGGAAATGTATAAATTAACTTTATTTGACTTCCTGATTACCGTTGCTACACTGATCCTGGTAGAGTTTCCACGCAGGATCGTGGTGGATCATTGCTCATGCAAACTGAGCCAGCTGGTGGGACGGCAAGAGTTTCTGGTTGCCCCGAATGTTCTTGCTCTCGTTTACAGTCAAACGGTGGTTTGGACTGGAGCTCTTTTCTGTCCATTGCTGCCATTTATCAACACCCTCAAATTCGTCATCTTTTATTATTGCAAAAAGATTACTCTCTTCCAAAACTGTCAACCGGCAACAAGAAACTTCAGATCCACCACCTCCAACTTCTTCTTTTTGTTGGTTCTGCTCTTTGGATGGATGTTGGCCAGTGTGGTTCTGCTTTACAGTGTTGCTAAGATCCATCCATCATATGGCTGCGGCCCTTTCCGTCTTGACCCAACTATGTGGGATGCTGTACCACAAGCTGTTAACATGCTAAGCACCACTAGTAGAGCTTTCCTGTTTTACATCGGCTCCCAGAAATGCTCTATTCCACTCTTCATCTTCTCTTGCATCCTTCTGTGCTATGTGAGCGCATTAACGTCAGTCCATGGGAAAAGTGTAGCGCTGCTGAAATCTCAGTGTGCACTGGAACAGCGTGATAAGCAATTCCTGATCAGACAAATTGAGGAGCTGAATGCCACAATGCAGAAAGCAGAACATGAACCCAAGCTGCTAAATACAGAGAACGAGCCTTTTCAACACACAGCAGCTACACAGTGGAATCAACACAACAATTACGCTTTTGACCCCGATGAAGATCCAAGGCCGTATTAAGGCTTTAGTGCTGTATATCGCACCAATTCTAGTGTCTAAGTCAGATTTTTGCTTTTAATAAACAAGTGAGCGTATTTGATCAAAAGAGACAGAAAGGGGATTACAAATAGTGTTGAATAAATGCtaatcaaagaaaataaaaataagaccaAGGATTGGAGTAATGATGCTCAATACATTGGCATCACAGGAGTAAATTAATTCTAAAATAGACaatttactgtttttactgtgtATTTGATCAACTTAATGCGGTCTTGGTGAGCATAAGAATTTGTGCGTCATTCTTTTTGACCTCAACCCTCTCTGTGGtagtgtatatatgtttatatttatccAATATTATGCCTGTTTATTTGCACGTTTACTCATTTCATAATTTGCTTGAATTACTTTGAACATTTTGTCAAAGTGAACAAGTTTCTGTGATGTATATTAATGCACTTTATTTACAGCAGCAGGCCATATACGCTGTGCctccttaaaaataaaatcataattattCATAAACTCAA

Function

GO:

id name namespace
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008381 mechanosensitive ion channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7489 Predicted to enable mechanosensitive ion channel activity. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Orthologous to several human genes including TMC4 (transmembrane channel like 4).

Ensembl:

ensembl_id ENSDART00000041054

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021969 lncRNA upstream 44031 31960908 ~ 31985059 (+) False XLOC_010041
TCONS_00019972 lncRNA upstream 58709 31960916 ~ 31970381 (+) True XLOC_010041
TCONS_00021726 lncRNA upstream 893659 31121756 ~ 31135431 (+) True XLOC_010031
TCONS_00021725 lncRNA upstream 901006 31121756 ~ 31128084 (+) False XLOC_010031
TCONS_00021968 lncRNA upstream 934510 31090998 ~ 31094580 (+) True XLOC_010030
TCONS_00021970 lncRNA downstream 42559 32092712 ~ 32095588 (+) False XLOC_010047
TCONS_00019987 lncRNA downstream 216966 32267119 ~ 32270270 (+) True XLOC_010051
TCONS_00021971 lncRNA downstream 228846 32278999 ~ 32314568 (+) False XLOC_010052
TCONS_00019989 lncRNA downstream 254701 32304854 ~ 32365571 (+) False XLOC_010052
TCONS_00019988 lncRNA downstream 254779 32304932 ~ 32314568 (+) False XLOC_010052
TCONS_00019973 mRNA upstream 2757 32014552 ~ 32026333 (+) True XLOC_010042
TCONS_00019970 mRNA upstream 68438 31942527 ~ 31960652 (+) False XLOC_010040
TCONS_00019969 mRNA upstream 68438 31942527 ~ 31960652 (+) False XLOC_010040
TCONS_00019971 mRNA upstream 68741 31942545 ~ 31960349 (+) True XLOC_010040
TCONS_00019965 mRNA upstream 105587 31922065 ~ 31923503 (+) False XLOC_010039
TCONS_00019975 mRNA downstream 1419 32051572 ~ 32058276 (+) True XLOC_010044
TCONS_00019976 mRNA downstream 9632 32059785 ~ 32080875 (+) True XLOC_010045
TCONS_00019977 mRNA downstream 32206 32082359 ~ 32085778 (+) False XLOC_010046
TCONS_00019978 mRNA downstream 32222 32082375 ~ 32090672 (+) False XLOC_010046
TCONS_00019979 mRNA downstream 32394 32082547 ~ 32090418 (+) True XLOC_010046
TCONS_00019968 other upstream 105166 31922787 ~ 31923924 (+) True XLOC_010039
TCONS_00019961 other upstream 192603 31829038 ~ 31836487 (+) True XLOC_010037
TCONS_00019955 other upstream 394495 31634470 ~ 31634595 (+) True XLOC_010035
TCONS_00019951 other upstream 1057933 30970501 ~ 30971157 (+) True XLOC_010029
TCONS_00019939 other upstream 1948429 30080543 ~ 30080661 (+) True XLOC_010021
TCONS_00019985 other downstream 142044 32192197 ~ 32196767 (+) True XLOC_010050
TCONS_00019992 other downstream 622667 32672820 ~ 32672936 (+) True XLOC_010055
TCONS_00020010 other downstream 1292998 33343151 ~ 33343265 (+) True XLOC_010067
TCONS_00020013 other downstream 1669816 33719969 ~ 33733378 (+) True XLOC_010069
TCONS_00020014 other downstream 1701949 33752102 ~ 33756379 (+) False XLOC_010070

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_09354981_09368973.mRNA True 2670 mRNA 0.43 16 CI01000027 9354981 ~ 9369462 (+)