Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00019978 |
| length | 1867 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 14 |
| gene id | XLOC_010046 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 32082359 ~ 32090672 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0000244 | spliceosomal tri-snRNP complex assembly | biological_process |
| GO:0060041 | retina development in camera-type eye | biological_process |
| GO:0008380 | RNA splicing | biological_process |
| GO:0071011 | precatalytic spliceosome | cellular_component |
| GO:0046540 | U4/U6 x U5 tri-snRNP complex | cellular_component |
| GO:0071339 | MLL1 complex | cellular_component |
| GO:0015030 | Cajal body | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005687 | U4 snRNP | cellular_component |
| GO:0005690 | U4atac snRNP | cellular_component |
| GO:0097526 | spliceosomal tri-snRNP complex | cellular_component |
| GO:0071005 | U2-type precatalytic spliceosome | cellular_component |
| GO:0003723 | RNA binding | molecular_function |
| GO:0030622 | U4atac snRNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-1561 | Predicted to enable U4atac snRNA binding activity. Acts upstream of or within mRNA splicing, via spliceosome and retina development in camera-type eye. Predicted to be located in nucleus. Predicted to be part of nucleus. Is expressed in retina and retinal neural layer. Used to study retinitis pigmentosa. Human ortholog(s) of this gene implicated in retinitis pigmentosa 11. Orthologous to human PRPF31 (pre-mRNA processing factor 31). |
| ensembl_id | ENSDART00000137029 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00021969 | lncRNA | upstream | 97316 | 31960908 ~ 31985059 (+) | False | XLOC_010041 |
| TCONS_00019972 | lncRNA | upstream | 111994 | 31960916 ~ 31970381 (+) | True | XLOC_010041 |
| TCONS_00021726 | lncRNA | upstream | 946944 | 31121756 ~ 31135431 (+) | True | XLOC_010031 |
| TCONS_00021725 | lncRNA | upstream | 954291 | 31121756 ~ 31128084 (+) | False | XLOC_010031 |
| TCONS_00021968 | lncRNA | upstream | 987795 | 31090998 ~ 31094580 (+) | True | XLOC_010030 |
| TCONS_00021970 | lncRNA | downstream | 2040 | 32092712 ~ 32095588 (+) | False | XLOC_010047 |
| TCONS_00019987 | lncRNA | downstream | 176447 | 32267119 ~ 32270270 (+) | True | XLOC_010051 |
| TCONS_00021971 | lncRNA | downstream | 188327 | 32278999 ~ 32314568 (+) | False | XLOC_010052 |
| TCONS_00019989 | lncRNA | downstream | 214182 | 32304854 ~ 32365571 (+) | False | XLOC_010052 |
| TCONS_00019988 | lncRNA | downstream | 214260 | 32304932 ~ 32314568 (+) | False | XLOC_010052 |
| TCONS_00019976 | mRNA | upstream | 1500 | 32059785 ~ 32080875 (+) | True | XLOC_010045 |
| TCONS_00019975 | mRNA | upstream | 24099 | 32051572 ~ 32058276 (+) | True | XLOC_010044 |
| TCONS_00019974 | mRNA | upstream | 32222 | 32029090 ~ 32050153 (+) | True | XLOC_010043 |
| TCONS_00019973 | mRNA | upstream | 56042 | 32014552 ~ 32026333 (+) | True | XLOC_010042 |
| TCONS_00019971 | mRNA | upstream | 122026 | 31942545 ~ 31960349 (+) | True | XLOC_010040 |
| TCONS_00019980 | mRNA | downstream | 2194 | 32092866 ~ 32095684 (+) | True | XLOC_010047 |
| TCONS_00019981 | mRNA | downstream | 40896 | 32131568 ~ 32147182 (+) | False | XLOC_010048 |
| TCONS_00019982 | mRNA | downstream | 45878 | 32136550 ~ 32146014 (+) | True | XLOC_010048 |
| TCONS_00019983 | mRNA | downstream | 61940 | 32152612 ~ 32159033 (+) | True | XLOC_010049 |
| TCONS_00019984 | mRNA | downstream | 93813 | 32184485 ~ 32196771 (+) | False | XLOC_010050 |
| TCONS_00019968 | other | upstream | 158451 | 31922787 ~ 31923924 (+) | True | XLOC_010039 |
| TCONS_00019961 | other | upstream | 245888 | 31829038 ~ 31836487 (+) | True | XLOC_010037 |
| TCONS_00019955 | other | upstream | 447780 | 31634470 ~ 31634595 (+) | True | XLOC_010035 |
| TCONS_00019951 | other | upstream | 1111218 | 30970501 ~ 30971157 (+) | True | XLOC_010029 |
| TCONS_00019939 | other | upstream | 2001714 | 30080543 ~ 30080661 (+) | True | XLOC_010021 |
| TCONS_00019985 | other | downstream | 101525 | 32192197 ~ 32196767 (+) | True | XLOC_010050 |
| TCONS_00019992 | other | downstream | 582148 | 32672820 ~ 32672936 (+) | True | XLOC_010055 |
| TCONS_00020010 | other | downstream | 1252479 | 33343151 ~ 33343265 (+) | True | XLOC_010067 |
| TCONS_00020013 | other | downstream | 1629297 | 33719969 ~ 33733378 (+) | True | XLOC_010069 |
| TCONS_00020014 | other | downstream | 1661430 | 33752102 ~ 33756379 (+) | False | XLOC_010070 |
