RNA id: TCONS_00021970


Basic Information

Item Value
RNA id TCONS_00021970
length 644
lncRNA type sense_over
GC content 0.44
exon number 3
gene id XLOC_010047
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 32092712 ~ 32095684 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TACTTTGTTctgattttttaaatatgctttaaatgggCCAATCACGTTTCAGCTTGGTGTTGCTGGAATTTAGAATGTCAATTGACGTTCCATCACGTTCTAAAGTTGACGTGTTGCTGAATTTGCGTCATTACTCAAGATCTGGTAGTCTCCAAATACACGAAGACTATCTCTCTGATAGATCGGTTTTTCAAAGTTCTCGTTTTTTAGACTATTtactcttttaaaatgtttacattactCGGAGTAATTGCTTTAGTCCTGCGAGAAAGGACCGTCAACAAAACCCACTCAGATGGGGAAGAACTCGTGGAGAAAAACACTCCATCCACGATGACCAGTGATGgtCGAGAAATTGATGGCAGGACCGAACACCTGTCATCAGAGGAACCAAACACCAGTGGTTGTCCAGTCCATGTTGATGACCACAGTGAGGTCCTCCTTTCTCCCAGCTCTGCGCCGACCCTTCAAACTCCAGACCATGCTGCAGCTCAAAATATTGACGACGTCCCTACAGTCTGTAGTGAGGATGATGTCCTTCAAGCTGCAGTGCCTTTGCTAGCTGACTTGTGTGCACCTGTTCTTCAGGACACTGAGCCACAGTCATGCCAGCAGCAGGATATGGAGAAAACTATAACTGgtCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021969 lncRNA upstream 107653 31960908 ~ 31985059 (+) False XLOC_010041
TCONS_00019972 lncRNA upstream 122331 31960916 ~ 31970381 (+) True XLOC_010041
TCONS_00021726 lncRNA upstream 957281 31121756 ~ 31135431 (+) True XLOC_010031
TCONS_00021725 lncRNA upstream 964628 31121756 ~ 31128084 (+) False XLOC_010031
TCONS_00021968 lncRNA upstream 998132 31090998 ~ 31094580 (+) True XLOC_010030
TCONS_00019987 lncRNA downstream 171531 32267119 ~ 32270270 (+) True XLOC_010051
TCONS_00021971 lncRNA downstream 183411 32278999 ~ 32314568 (+) False XLOC_010052
TCONS_00019989 lncRNA downstream 209266 32304854 ~ 32365571 (+) False XLOC_010052
TCONS_00019988 lncRNA downstream 209344 32304932 ~ 32314568 (+) False XLOC_010052
TCONS_00021972 lncRNA downstream 209623 32305211 ~ 32314568 (+) True XLOC_010052
TCONS_00019978 mRNA upstream 2040 32082375 ~ 32090672 (+) False XLOC_010046
TCONS_00019979 mRNA upstream 2294 32082547 ~ 32090418 (+) True XLOC_010046
TCONS_00019977 mRNA upstream 6934 32082359 ~ 32085778 (+) False XLOC_010046
TCONS_00019976 mRNA upstream 11837 32059785 ~ 32080875 (+) True XLOC_010045
TCONS_00019975 mRNA upstream 34436 32051572 ~ 32058276 (+) True XLOC_010044
TCONS_00019981 mRNA downstream 35980 32131568 ~ 32147182 (+) False XLOC_010048
TCONS_00019982 mRNA downstream 40962 32136550 ~ 32146014 (+) True XLOC_010048
TCONS_00019983 mRNA downstream 57024 32152612 ~ 32159033 (+) True XLOC_010049
TCONS_00019984 mRNA downstream 88897 32184485 ~ 32196771 (+) False XLOC_010050
TCONS_00019986 mRNA downstream 142432 32238020 ~ 32276030 (+) False XLOC_010051
TCONS_00019968 other upstream 168788 31922787 ~ 31923924 (+) True XLOC_010039
TCONS_00019961 other upstream 256225 31829038 ~ 31836487 (+) True XLOC_010037
TCONS_00019955 other upstream 458117 31634470 ~ 31634595 (+) True XLOC_010035
TCONS_00019951 other upstream 1121555 30970501 ~ 30971157 (+) True XLOC_010029
TCONS_00019939 other upstream 2012051 30080543 ~ 30080661 (+) True XLOC_010021
TCONS_00019985 other downstream 96609 32192197 ~ 32196767 (+) True XLOC_010050
TCONS_00019992 other downstream 577232 32672820 ~ 32672936 (+) True XLOC_010055
TCONS_00020010 other downstream 1247563 33343151 ~ 33343265 (+) True XLOC_010067
TCONS_00020013 other downstream 1624381 33719969 ~ 33733378 (+) True XLOC_010069
TCONS_00020014 other downstream 1656514 33752102 ~ 33756379 (+) False XLOC_010070

Expression Profile

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