RNA id: TCONS_00019983


Basic Information

Item Value
RNA id TCONS_00019983
length 2694
RNA type mRNA
GC content 0.44
exon number 6
gene id XLOC_010049
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 32152612 ~ 32159033 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCTCAGGTGAACTCAGGGAAAACATGGATTTGATGAGCTTCATTCTCTTATGGGCTGGGCTGATGAAAGTCGCAGAAGCCTCAATTGCACAGTTCAGCCAGTTGGGAGCCTCAGCCCCTGGAAACATCATCATTGGAGGACTTTTCCCCATCCATGAGGCAGTGGTGCCAGTAAACTACACCGGCAACAACAGCATCTCTGCCCCTGAGCATCCGGACTGCATCAGATTCTACACAAAGGGTCTAAATCAAGCTCTAGCGATGATTAATGCTGTAGAAATGGCAAACAAATCCCCCATGTTGAGCAGTTTGAACATTACTCTAGGATACCGAATCTACGACACATGTTCTGATGTCACGACTGCACTGCGGGCTGTCCATGATATTATGAGGCCGTTCTCAGACTGTGAATCACCAGAAGACTCATCTCAACCCGTCCAGCCAATAATGGCAGTAATTGGGACCACTTCATCCGAGATCTCAATCGCAGTTGCTCGAGATCTCAACCTTCAGATGATACCTCAGATTAGTTACGCATCTACAGCCACGATTTTGAGTGATAAAAGTCGTTTCCCTGCTTTCATGAGGACTGTGCCCAGTGATGAGTATCAAACCTGTGCCATGGCCAAACTTCTAAAGTCCAACAAATGGAGCTGGGTTGGCATTATCATTACAGATGGAGATTATGGACGTTCTGCCTTGGAAGGTTTCATACAGCACACCGAAACGGAGGGAATTTGCATCGCCTTTAAAGCAATCCTTCCAGACTCACTAGCAGATCAACAGAAACTAAACACAGACATCGAAAACACCTTGAACATCATTGAAAACAATCCGAAAGTTAGAGTGGTGATCTCGTTTGCTAAATCCTCTCAAATGCAGTTGCTATTTAAGGGGCTGCAGAgtagaaacatttcaaataacatGGTGTGGGTTGCCAGTGATAACTGGTCGACGGCTAAACATATTCTGAATGATGGTAGCATCACTGATATTGGGAAAGTGCTGGGCTTTACCTTCAAGAGTGGAAATTTTACATCTTTTCATCAGTACCTAAAGAATCTACAGTTTGAAAGTGAAGATGAGATGAACAATTCATTCCTGAAGGAATTTTTAAAACTCAACGCAGGCAATGCTTCCAATACCGTGCTGGAGCTGATGAAAAGCACCAATTTGGACAAGATTTTCAGCATTGAGATGGCCGTCACTGCTGTTGCTAATGCTGTGGCTAAACTATGTGCAGAAAGACAATGTCAGGACTCTACAGCTCTCCAGCCTTGGGAGCTCCTTAGGCAGTTGCGGAGCATCACTTTTGAGAATGGAGGAGAAATGTACAAATTTGATGCGAATGGTGATATTAATTTGGGTTATGATCTCTTCCTGTGGGAAGGAGATCAATCTGACGAACATGCTGATGACATAATAGCAGAATATGATCCAACCAAAGGTGGATTCCACTACATACACAATGATCTGAGTGAAATTAAGAAAGTGGTATCTAGGTGTTCAAACAGCTGTCAGCCAGGCCAGTACAAGAAAACAGCAGAGGGTCAGCACACATGCTGTTATGAGTGCCTCACCTGTGTGGAAAACCATTATTCCAACATAACAGATGCTGATGAATGTTCCCCATGTGACAGTGAGAGCATGTGGTCATTGGCCAACAGCACTGAATGTCATCCCAAGGTTTTTGAATACTTTGATTGGAACAGTGGCTTCGCTATTGTCCTGCTGATACTGGCTGCCCTCGGCGTCCTTCTCCTCTTCTTCATGTCCGCACTATTCTTCTGGCAAAGACACTCTCCGGTGGTCAAGGCTGCAGGCGGGCCGCTTTGTCATCTGATCCTTGTCTCCCTGCTGGGCAGTTTTATCAGTGTCGTTTTCTTTGTAGGCGAACCGAGCGATTTGACATGCAGGGCAAGGCAGGTTATCTTCGGCTTCAGCTTCACGCTGTGCGTCTCATGCATCCTGGTCAAGTCCTTAAAAATCCTGCTGGCGTTCGAGATGAACTTTGAGCTGAAGGAGCTTCTCTGTATGCTCTATAAGCCATATATGATTGTCAGCGTCGGCATGGGGGTACAGATCATCATTTGCACTGTTTGGCTGACCTTGTACAAGCCGTTTAAAGACAAAGAGGTGCAGACCGAATCCATTCTACTTGAATGTAACGAGGGATTCTATGTGATGTTTTGGTTAATGCTGGGATATATAGCTTTGTTGGCTTTGTTCTGCTTCACGTTTGCATATATAGGCAGAAAACTACCTCAGAAGTACAATGAAGCCAAGTTCATCACTTTCAGCATGGTCATCTGCCTCATGGCGTGGATCATCTTCATCCCGATTCATGTCACCACCAGTGGCAAATACGTGCCGGCTGTGGAAATGGTTGTCATTCTTATTTCAAACTATGGAATCCTGAGCTGTCACTTTTTGCCCAAATCTTACATTATTCTTTTCAAAAAGGAGCACAATACTAAAGACGCATTCATGAAGAATGTTTATGAATATGCAAGAAAGAGCGCAGAGAATATCAAGGGCTTGACCGGGACTGAGCCGCAATTTAAACAAGAGAATTCGGTCTACACAATATCCAATCTGTCATTCGTGCCTGAAGAGAAACacgaataataataaataccacGACCTAAAATGGTACTCATATGATGCAAGAATTCAATGTCGGGAGTCAATGCA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0006874 cellular calcium ion homeostasis biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0016595 glutamate binding molecular_function
GO:0016597 amino acid binding molecular_function

KEGG:

id description
ko04621 NOD-like receptor signaling pathway
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-041217-22 Enables glutamate binding activity. Acts upstream of or within cellular calcium ion homeostasis. Predicted to be located in plasma membrane. Predicted to be integral component of plasma membrane. Orthologous to human GPRC6A (G protein-coupled receptor class C group 6 member A).

Ensembl:

ensembl_id ENSDART00000008880

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021970 lncRNA upstream 57024 32092712 ~ 32095588 (+) False XLOC_010047
TCONS_00021969 lncRNA upstream 167553 31960908 ~ 31985059 (+) False XLOC_010041
TCONS_00019972 lncRNA upstream 182231 31960916 ~ 31970381 (+) True XLOC_010041
TCONS_00021726 lncRNA upstream 1017181 31121756 ~ 31135431 (+) True XLOC_010031
TCONS_00021725 lncRNA upstream 1024528 31121756 ~ 31128084 (+) False XLOC_010031
TCONS_00019987 lncRNA downstream 108086 32267119 ~ 32270270 (+) True XLOC_010051
TCONS_00021971 lncRNA downstream 119966 32278999 ~ 32314568 (+) False XLOC_010052
TCONS_00019989 lncRNA downstream 145821 32304854 ~ 32365571 (+) False XLOC_010052
TCONS_00019988 lncRNA downstream 145899 32304932 ~ 32314568 (+) False XLOC_010052
TCONS_00021972 lncRNA downstream 146178 32305211 ~ 32314568 (+) True XLOC_010052
TCONS_00019981 mRNA upstream 5430 32131568 ~ 32147182 (+) False XLOC_010048
TCONS_00019982 mRNA upstream 6598 32136550 ~ 32146014 (+) True XLOC_010048
TCONS_00019980 mRNA upstream 56928 32092866 ~ 32095684 (+) True XLOC_010047
TCONS_00019978 mRNA upstream 61940 32082375 ~ 32090672 (+) False XLOC_010046
TCONS_00019979 mRNA upstream 62194 32082547 ~ 32090418 (+) True XLOC_010046
TCONS_00019984 mRNA downstream 25452 32184485 ~ 32196771 (+) False XLOC_010050
TCONS_00019986 mRNA downstream 78987 32238020 ~ 32276030 (+) False XLOC_010051
TCONS_00019991 mRNA downstream 400788 32559821 ~ 32563092 (+) True XLOC_010054
TCONS_00019993 mRNA downstream 570190 32729223 ~ 32734765 (+) True XLOC_010056
TCONS_00019994 mRNA downstream 577555 32736588 ~ 32743653 (+) False XLOC_010057
TCONS_00019968 other upstream 228688 31922787 ~ 31923924 (+) True XLOC_010039
TCONS_00019961 other upstream 316125 31829038 ~ 31836487 (+) True XLOC_010037
TCONS_00019955 other upstream 518017 31634470 ~ 31634595 (+) True XLOC_010035
TCONS_00019951 other upstream 1181455 30970501 ~ 30971157 (+) True XLOC_010029
TCONS_00019939 other upstream 2071951 30080543 ~ 30080661 (+) True XLOC_010021
TCONS_00019985 other downstream 33164 32192197 ~ 32196767 (+) True XLOC_010050
TCONS_00019992 other downstream 513787 32672820 ~ 32672936 (+) True XLOC_010055
TCONS_00020010 other downstream 1184118 33343151 ~ 33343265 (+) True XLOC_010067
TCONS_00020013 other downstream 1560936 33719969 ~ 33733378 (+) True XLOC_010069
TCONS_00020014 other downstream 1593069 33752102 ~ 33756379 (+) False XLOC_010070

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_09424746_09432978.mRNA True 3506 mRNA 0.41 9 CI01000027 9424746 ~ 9433471 (+)