RNA id: TCONS_00019984


Basic Information

Item Value
RNA id TCONS_00019984
length 2055
RNA type mRNA
GC content 0.46
exon number 12
gene id XLOC_010050
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 32184485 ~ 32196771 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCCGGTTTTCTCGAGCGGCCTCATTCAATAACAAATGAAAAGTGAAACGGCCGATTGTTGGTGTTTGCTTATTTACTTCTGTATAGCCTCGAAACAATGCCTGTGTGTGACATCTGCTGTGAAGAGCTTCTGTCTGAGGCAGAGATGAAAACACATCTCCTGCTGAGCCACATGGAGAATCTGATGGCCTGTCCATTCTGCTCTTTATCCGGAGTCTCGTATGATGAACTGAGCTTCCACATCAACACCGCACACACGGACAAAGATTACCAGGACACAAATGTGACAATGGTTAACAGTGGACAGAAAAATGACTGCATTACTAAAAGTACCTCAAATGTAAATGCAACAAATACGTGCAAAGCATCACATCAGCTGCTACCTCAAGTAAATGGGACGGCTACCCAAATTACAGGGACTAGTCATTCCCAAGGACCCTCAGCTAGTCGTAAAAGTTCACCACCTGCAGCAGCTACAGCGAATGGTGCAATAAAACTGGTCAGAACAACACAAACACCCAGTAATTACACCAGAAGGAAGAGTGAAGATGGGCACCAAAAATCAAAGCAGAAGCGCTTGTCTTCACCATTTAAAGAAGGATGCTTCCCATGTCCAATGTGCAATTTGGTTTACAGTGACTGCTTTGCTCTTCAGGAGCATGTTGAGATTCATCTACAAGACCAAGATGCAGGAACTGGGTCTGATGTTGAAACATTAACTAAAATATCTGCTGAAAGCAATGACAGAGCGGGTGGGATGCGTTATGAGTGTCCGATGTGTTCCCTGAGGTGTTCCTGCAGCAGTTCACTGCAAGAGCATGTTGAGCTGCATTTGGAATACAGCTCTGCATCTGCTACAGGTCATTCACCGGGGGAAGATCTGACTCTGGCCAGGAAGCTTCAGGAGGAAGAGGAGCAAAACTGGAGGGAGGTACAGACAAGGCGGGAAGCTGAAGACTTTAAGAAGCTCCAGAAGCAGTTTGGGCTTGATAACAGTGGTGGCTATCGGAAGCAAATGGAGAGGAATCTGGACAGGGCTGTGTCTCGAGGTCAGATGCTTCCTGCAGATTTCCACAGGAAGAGAGCGGAGATGCTGGAGTCTTTGGCCTCAGGGGTGGATGATGGCAGAAGCAAAACTTCAGGTCTTATGGAAGCTCTGTATAGATATTATCAGAGAGACGCGTCTGACTGTGCGCATGTCTGGCTTTGTGCTGAGACTGATCACTACTCCTCTTCGGAGGGGGATAAAGGATGGGGATGTGGATACAGAAACTTCCAGATGCTTCTTTCATCTTTGCACAGGATGGAGCAGTATAAGCATTTACCTGTTTCAGTGCCCAGCATTCCCAGAGTCCAAGCTTTGATGGAAGAGGCGTGGGCTCAAGGTGCAGATCCTCAGGGTGCTTCACACTTCAACAATCGGCTGCAGGGCACACGGGCTTGGATAGGAGCTACAGAAATATATGCAGTCCTCACTTCTCTTAGTGTGAAAGCCAGAATTGTGGATTTTCACAAGCCCACTGGTCCAAGAGAGACACACCCCAGGCTGTTTGAGTGGGTGAAACAGTATTTCACACATTCTACCAGCAGGGGTGCAAGACTGCCACCTAAAGTAGTGCAGACAACATTACCACCTGTATATTTACAGCATCAAGGCCACAGTCGTTCCATCATCGGAATGGAAGAGAAAGCGAATGGTAAACTATGCCTCCTCTTCTTCGATCCGGGGGTTACACCAGCAGAAATGAAGAAAGTGTTGTCTCAGGATACAGTAACGTCCATGGTACAACGTATGCGCAAATATACCAGTGGCCTAAAACACAAACAGTATCAAGTGGTCATTGTGGAAGGGGTGCTAACAGCTGAGGAGAAACAGAGTCGTATTTTAAATTCAAGGACACTACGTGCAGAGAAAATCCCCTGATGGAATCCCCTGACTGCAGTTTTATCTACTAGCCCTTGCTACTTTTATCAATCTGCCCCATGATGCACTGTGAAACACagtatttttgtataaatgtcaataaacataaataaataatgagtttTATCTTA

Function

GO:

id name namespace
GO:0010468 regulation of gene expression biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-070209-211 Predicted to enable metal ion binding activity. Predicted to be involved in regulation of gene expression. Predicted to be active in nucleus. Orthologous to human ZUP1 (zinc finger containing ubiquitin peptidase 1).

Ensembl:

ensembl_id ENSDART00000084009

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021970 lncRNA upstream 88897 32092712 ~ 32095588 (+) False XLOC_010047
TCONS_00021969 lncRNA upstream 199426 31960908 ~ 31985059 (+) False XLOC_010041
TCONS_00019972 lncRNA upstream 214104 31960916 ~ 31970381 (+) True XLOC_010041
TCONS_00021726 lncRNA upstream 1049054 31121756 ~ 31135431 (+) True XLOC_010031
TCONS_00021725 lncRNA upstream 1056401 31121756 ~ 31128084 (+) False XLOC_010031
TCONS_00019987 lncRNA downstream 70348 32267119 ~ 32270270 (+) True XLOC_010051
TCONS_00021971 lncRNA downstream 82228 32278999 ~ 32314568 (+) False XLOC_010052
TCONS_00019989 lncRNA downstream 108083 32304854 ~ 32365571 (+) False XLOC_010052
TCONS_00019988 lncRNA downstream 108161 32304932 ~ 32314568 (+) False XLOC_010052
TCONS_00021972 lncRNA downstream 108440 32305211 ~ 32314568 (+) True XLOC_010052
TCONS_00019983 mRNA upstream 25452 32152612 ~ 32159033 (+) True XLOC_010049
TCONS_00019981 mRNA upstream 37303 32131568 ~ 32147182 (+) False XLOC_010048
TCONS_00019982 mRNA upstream 38471 32136550 ~ 32146014 (+) True XLOC_010048
TCONS_00019980 mRNA upstream 88801 32092866 ~ 32095684 (+) True XLOC_010047
TCONS_00019978 mRNA upstream 93813 32082375 ~ 32090672 (+) False XLOC_010046
TCONS_00019986 mRNA downstream 41249 32238020 ~ 32276030 (+) False XLOC_010051
TCONS_00019991 mRNA downstream 363050 32559821 ~ 32563092 (+) True XLOC_010054
TCONS_00019993 mRNA downstream 532452 32729223 ~ 32734765 (+) True XLOC_010056
TCONS_00019994 mRNA downstream 539817 32736588 ~ 32743653 (+) False XLOC_010057
TCONS_00019995 mRNA downstream 539827 32736598 ~ 32744258 (+) True XLOC_010057
TCONS_00019968 other upstream 260561 31922787 ~ 31923924 (+) True XLOC_010039
TCONS_00019961 other upstream 347998 31829038 ~ 31836487 (+) True XLOC_010037
TCONS_00019955 other upstream 549890 31634470 ~ 31634595 (+) True XLOC_010035
TCONS_00019951 other upstream 1213328 30970501 ~ 30971157 (+) True XLOC_010029
TCONS_00019939 other upstream 2103824 30080543 ~ 30080661 (+) True XLOC_010021
TCONS_00019992 other downstream 476049 32672820 ~ 32672936 (+) True XLOC_010055
TCONS_00020010 other downstream 1146380 33343151 ~ 33343265 (+) True XLOC_010067
TCONS_00020013 other downstream 1523198 33719969 ~ 33733378 (+) True XLOC_010069
TCONS_00020014 other downstream 1555331 33752102 ~ 33756379 (+) False XLOC_010070
TCONS_00020038 other downstream 2527797 34724568 ~ 34724682 (+) True XLOC_010085

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_09448387_09455263.mRNA True 2750 mRNA 0.42 7 CI01000027 9447047 ~ 9455293 (+)