Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00019985 |
| length | 677 |
| RNA type | nonsense_mediated_decay |
| GC content | 0.45 |
| exon number | 4 |
| gene id | XLOC_010050 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 32184485 ~ 32196771 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0010468 | regulation of gene expression | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| id | description |
|---|---|
| ko04121 | Ubiquitin system |
| id | description |
|---|---|
| ZDB-GENE-070209-211 | Predicted to enable metal ion binding activity. Predicted to be involved in regulation of gene expression. Predicted to be active in nucleus. Orthologous to human ZUP1 (zinc finger containing ubiquitin peptidase 1). |
| ensembl_id | ENSDART00000141577 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00021970 | lncRNA | upstream | 96609 | 32092712 ~ 32095588 (+) | False | XLOC_010047 |
| TCONS_00021969 | lncRNA | upstream | 207138 | 31960908 ~ 31985059 (+) | False | XLOC_010041 |
| TCONS_00019972 | lncRNA | upstream | 221816 | 31960916 ~ 31970381 (+) | True | XLOC_010041 |
| TCONS_00021726 | lncRNA | upstream | 1056766 | 31121756 ~ 31135431 (+) | True | XLOC_010031 |
| TCONS_00021725 | lncRNA | upstream | 1064113 | 31121756 ~ 31128084 (+) | False | XLOC_010031 |
| TCONS_00019987 | lncRNA | downstream | 70352 | 32267119 ~ 32270270 (+) | True | XLOC_010051 |
| TCONS_00021971 | lncRNA | downstream | 82232 | 32278999 ~ 32314568 (+) | False | XLOC_010052 |
| TCONS_00019989 | lncRNA | downstream | 108087 | 32304854 ~ 32365571 (+) | False | XLOC_010052 |
| TCONS_00019988 | lncRNA | downstream | 108165 | 32304932 ~ 32314568 (+) | False | XLOC_010052 |
| TCONS_00021972 | lncRNA | downstream | 108444 | 32305211 ~ 32314568 (+) | True | XLOC_010052 |
| TCONS_00019983 | mRNA | upstream | 33164 | 32152612 ~ 32159033 (+) | True | XLOC_010049 |
| TCONS_00019981 | mRNA | upstream | 45015 | 32131568 ~ 32147182 (+) | False | XLOC_010048 |
| TCONS_00019982 | mRNA | upstream | 46183 | 32136550 ~ 32146014 (+) | True | XLOC_010048 |
| TCONS_00019980 | mRNA | upstream | 96513 | 32092866 ~ 32095684 (+) | True | XLOC_010047 |
| TCONS_00019978 | mRNA | upstream | 101525 | 32082375 ~ 32090672 (+) | False | XLOC_010046 |
| TCONS_00019986 | mRNA | downstream | 41253 | 32238020 ~ 32276030 (+) | False | XLOC_010051 |
| TCONS_00019991 | mRNA | downstream | 363054 | 32559821 ~ 32563092 (+) | True | XLOC_010054 |
| TCONS_00019993 | mRNA | downstream | 532456 | 32729223 ~ 32734765 (+) | True | XLOC_010056 |
| TCONS_00019994 | mRNA | downstream | 539821 | 32736588 ~ 32743653 (+) | False | XLOC_010057 |
| TCONS_00019995 | mRNA | downstream | 539831 | 32736598 ~ 32744258 (+) | True | XLOC_010057 |
| TCONS_00019968 | other | upstream | 268273 | 31922787 ~ 31923924 (+) | True | XLOC_010039 |
| TCONS_00019961 | other | upstream | 355710 | 31829038 ~ 31836487 (+) | True | XLOC_010037 |
| TCONS_00019955 | other | upstream | 557602 | 31634470 ~ 31634595 (+) | True | XLOC_010035 |
| TCONS_00019951 | other | upstream | 1221040 | 30970501 ~ 30971157 (+) | True | XLOC_010029 |
| TCONS_00019939 | other | upstream | 2111536 | 30080543 ~ 30080661 (+) | True | XLOC_010021 |
| TCONS_00019992 | other | downstream | 476053 | 32672820 ~ 32672936 (+) | True | XLOC_010055 |
| TCONS_00020010 | other | downstream | 1146384 | 33343151 ~ 33343265 (+) | True | XLOC_010067 |
| TCONS_00020013 | other | downstream | 1523202 | 33719969 ~ 33733378 (+) | True | XLOC_010069 |
| TCONS_00020014 | other | downstream | 1555335 | 33752102 ~ 33756379 (+) | False | XLOC_010070 |
| TCONS_00020038 | other | downstream | 2527801 | 34724568 ~ 34724682 (+) | True | XLOC_010085 |
