RNA id: TCONS_00019987


Basic Information

Item Value
RNA id TCONS_00019987
length 545
lncRNA type retained_intron
GC content 0.47
exon number 2
gene id XLOC_010051
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 32238020 ~ 32276030 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACCGGGAGGACATGCGCAGTGAGGACGGCATGCAGGTATGATCCGAGGGTAAACCGATGGACTGAAATTGCACCCATGAAGGCGTGCAGGGAGCACTTTGTGCTGGGAGCCCTGGGACAGTATCTATATGCCGTCGGGGGCAGAAATGAACTGAGGCAGGTTCTGCCCAGCGTGGAGCGTTACTGCCCCAAGAGGAACAAGTGGACCTATGTGCAACCATTTGACCGCTCGCTGTCCTGTCATGCAGGTTGTGTGGCGGATGGGCTACTCTGGGTGTCAGGTGGTGTCACTAACACAGCTCAGTACCAGAACCGACTGATGGTGTATGACCCAGGACaggtattatattattatgtatttttgattattaCAAATGTCCACAATGTGgtttacacaaacacacgcacacattgaTATCACAACTGCTTTCAATAAAGATTGCAATAAGAAATATTTTGAGCACTGAATCAGCACACTGCAAAACAGCTCagtttcttacttagagtttttgttttgtttctagtccaaaaatcttgaaattctt

Function

GO: NA

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-070209-47 Orthologous to human KLHL32 (kelch like family member 32).

Ensembl:

ensembl_id ENSDART00000143873

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021970 lncRNA upstream 171531 32092712 ~ 32095588 (+) False XLOC_010047
TCONS_00021969 lncRNA upstream 282060 31960908 ~ 31985059 (+) False XLOC_010041
TCONS_00019972 lncRNA upstream 296738 31960916 ~ 31970381 (+) True XLOC_010041
TCONS_00021726 lncRNA upstream 1131688 31121756 ~ 31135431 (+) True XLOC_010031
TCONS_00021725 lncRNA upstream 1139035 31121756 ~ 31128084 (+) False XLOC_010031
TCONS_00021971 lncRNA downstream 8729 32278999 ~ 32314568 (+) False XLOC_010052
TCONS_00019989 lncRNA downstream 34584 32304854 ~ 32365571 (+) False XLOC_010052
TCONS_00019988 lncRNA downstream 34662 32304932 ~ 32314568 (+) False XLOC_010052
TCONS_00021972 lncRNA downstream 34941 32305211 ~ 32314568 (+) True XLOC_010052
TCONS_00019990 lncRNA downstream 127237 32397507 ~ 32509458 (+) True XLOC_010053
TCONS_00019984 mRNA upstream 70348 32184485 ~ 32196771 (+) False XLOC_010050
TCONS_00019983 mRNA upstream 108086 32152612 ~ 32159033 (+) True XLOC_010049
TCONS_00019981 mRNA upstream 119937 32131568 ~ 32147182 (+) False XLOC_010048
TCONS_00019982 mRNA upstream 121105 32136550 ~ 32146014 (+) True XLOC_010048
TCONS_00019980 mRNA upstream 171435 32092866 ~ 32095684 (+) True XLOC_010047
TCONS_00019991 mRNA downstream 289551 32559821 ~ 32563092 (+) True XLOC_010054
TCONS_00019993 mRNA downstream 458953 32729223 ~ 32734765 (+) True XLOC_010056
TCONS_00019994 mRNA downstream 466318 32736588 ~ 32743653 (+) False XLOC_010057
TCONS_00019995 mRNA downstream 466328 32736598 ~ 32744258 (+) True XLOC_010057
TCONS_00019996 mRNA downstream 479321 32749591 ~ 32755900 (+) True XLOC_010058
TCONS_00019985 other upstream 70352 32192197 ~ 32196767 (+) True XLOC_010050
TCONS_00019968 other upstream 343195 31922787 ~ 31923924 (+) True XLOC_010039
TCONS_00019961 other upstream 430632 31829038 ~ 31836487 (+) True XLOC_010037
TCONS_00019955 other upstream 632524 31634470 ~ 31634595 (+) True XLOC_010035
TCONS_00019951 other upstream 1295962 30970501 ~ 30971157 (+) True XLOC_010029
TCONS_00019992 other downstream 402550 32672820 ~ 32672936 (+) True XLOC_010055
TCONS_00020010 other downstream 1072881 33343151 ~ 33343265 (+) True XLOC_010067
TCONS_00020013 other downstream 1449699 33719969 ~ 33733378 (+) True XLOC_010069
TCONS_00020014 other downstream 1481832 33752102 ~ 33756379 (+) False XLOC_010070
TCONS_00020038 other downstream 2454298 34724568 ~ 34724682 (+) True XLOC_010085

Expression Profile

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