RNA id: TCONS_00019989


Basic Information

Item Value
RNA id TCONS_00019989
length 2922
lncRNA type inter_gene
GC content 0.39
exon number 4
gene id XLOC_010052
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 32278999 ~ 32365571 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTggaactgtaataataatatccTCACTGCAAACAGTTATGATTGAGAAGCTCGGGTAGTTAATGTGCGTCCGTTTGTCACTCTTCGCAGTAAAGCATATTAAGAGACACACAACTATAAATTGACAATGAATTCAAGAAATGCGATTGAATCGTCGCATGCGTTATGCACTAATATGTTTTTTATCTTCACTACAGTCTGATTAAAAACTAGTGCATCTCCGTTAAATAAAACTAGATCCAGAGTTACCCTGATTTCCATTTGCAGATCTCTATCCGCCGGCTGCAGCTTTGGTCATCGCCTTGCAtacatttaaaagcatatttcCCAGTCCTCGCATCTGCCGAATGCCGAAAAGTCGATTTGATCATCTTTTATTCGACGCTCGTGTCTCATCGGTTAGTTTTATGAACGAAATTAGATGTCGGGACGTTTTGTTAAAAGCGGCATATGTCGTCGCATACcgcttttttttttggcaattgCACATAATACAATGAGCAACGCTATAGCCTATTCGGTTCATCAAAATGCGCTTTTTACCCTATACATGGATGTGTACAGCTCAGCGCGCAGTCGGACAGAAGGCCGAGCAGCTTAAGTGGGAAAACGTCCAGCTTTACCGGAAGATTGACTGGCCGATTTTGAGGAGCAGGGAAACTCCATCCATATTGAAGCACATCTGGGCATGGATTGGAGAGGCCTGCTGTGCTGCTGCCCACACACCGCTGCAGTGACGCGCTTTGGCCGCCGGAGGGCAGCGCGGGACTGGAACCCACTGCCTGTGGAGGAAGGGAAGGTGCCGAGGAGCGAGGCGGTTGTGTGAGATCGCCGGACTACAGTTCATCTCACGGaggGCTATGATTACTCACGTAGCTCTGCGGCGAGCAGACGAGAACGTGCCTGAATCAGCCTGGCGGCGCCTCCACTTCGCTCTGCCAGTGAGGGAGAAACACAGAGTGAcgtggagagagagaaaaagagagcaaAAATGACAGAGAAACAGTAAAAAAGGTGAAGGGGGACGTGAGTCTCTTGATGAGGCGATACCTTGTCCGTACACACCAACACAAACTGTGCTGAGGTAATGATATGCTAATGAGATGCAAATGATATGCAAATCCAGCAGCAGTATTCCATATCAGCGGTGTGAGAGGATTTCAGTGAGGCCCTTCACCAGTGGGTGGAAAGGAAAGACCTCCTGATctcactgtacacacacacacacaccgaatgGATGCACTCACACTCATTTTCCCATCTGATTGTGAAGTTTGGTGAATCTAGGCTGAAAAAAGAAGTGTTGAAAAGTACTATTCCTCCCGTCTGCCTATTTCTGTTATTCTGATTCATGCAGTACTGGAATTTCTATCTTATACAATACCTTATTGGCATAAAACGTTAACACTAATCAAAACAAGTTGCtatgatattatatattattgtttatacaTATGAATAATACAGATTAACTTTAGTGGACAACATTTTTTATATGTGACaatgattaattaaaatttattaataaaacagtttACTGATTTTAACAATAAATACTTCAAATGTTTATAGTGGTGTAAAACATTAACACTATACTAAACACACTACTATAAAATGATGTATATAGGAACAGTACAGATAAACTGTTCCCTGCTTCAAATGTTGGTATTAgtataaaacaaaatgacatcACATTTGGATTGTGCTAAAGCTCTCTTGAGGATGAGGTACCAATCCTCAAAAGCTCATGTACTGCAGAAACAATACCTGTCGTACTTCTGTGCAGGAAAAAAtgacaacagactgggtcatagGTCCAATCACTGCATATTTGCGTCACGTAAAGAAAGGGCTTGGGAATAAGTCGCTGGGATGATTCATAGGGGAGTCATTGGGAAAAggaggtaaaaataaatatataagacaCTGAAAGTGTTTTTTAACCTTGCATACATATCATCCTATTGTTGGGCACTTCAACTAGCAAAATATAACCTTTCGTAacccaaaataggggctctttaaaactaTTACAACAGCATTAATATTACTAAAGACATATTACAACAGCATTAATTATAGTTAACATTTGCCAGAATAAACCGCAAGTATGGCTCAGTGTTGAGAATTTTTACTACTCCTATATTTTTACTACTGCTATATTTATTGTTttccttgtttgttttttgcaatgcTCTTCCAATTTTAgtcataaaaaagtaaatatgtgccttatatattaacttatataAAGGTAAATTAAGACAAATAAATAGttataaacaaataagcaaattaaaaacaaaaataaattcaaaagatGAAACATACAGATGAAACGCttcttaaaatgatttaagtaGGTCTAGGGATGATTTTTGCTGTATTAGAAATCACTCCCTATATACTTTCATGcactattccctacattagtTCACAAATTTAGACCACTTAAAGGAGTGAATGAAAACGAGTGAGTCAATTTGAGCACTGAGTTCAATGGAAGGTATGTAGTTTAGTTTGTTCTTTTCTGCCCCTCAGATTTTCAACTGCAGTGACGTCATTTAACGTTCTGAGAGCTGACTAGTAATGGAAAGGGTGTTGATTTCTGTCACATATACAATTtttagcaattattttttttatttagaaattttaCACGTTTGATTTCACTGTGgatgccatcttgtggtcagatgCAGAAATTCATTTTTGTATAAACAAATTTTCACCGTGCATCATAGGTATTTTCTTGCTGTTGAATGAACATCAGTTGTACACTTGTTTTtgtggtgcattgtgggattgattgagcATACTTTAGAACGTCCATTGGGTTTTCTAACAACACTACAAATGGCTGCTTCCATAAACagtgacagcacacatgctgcaaatcctcaaaACGCAAACACattgcgc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019987 lncRNA upstream 34584 32267119 ~ 32270270 (+) True XLOC_010051
TCONS_00021970 lncRNA upstream 209266 32092712 ~ 32095588 (+) False XLOC_010047
TCONS_00021969 lncRNA upstream 319795 31960908 ~ 31985059 (+) False XLOC_010041
TCONS_00019972 lncRNA upstream 334473 31960916 ~ 31970381 (+) True XLOC_010041
TCONS_00021726 lncRNA upstream 1169423 31121756 ~ 31135431 (+) True XLOC_010031
TCONS_00019990 lncRNA downstream 31936 32397507 ~ 32509458 (+) True XLOC_010053
TCONS_00021973 lncRNA downstream 693328 33058899 ~ 33063159 (+) True XLOC_010060
TCONS_00021974 lncRNA downstream 814535 33180106 ~ 33214537 (+) True XLOC_010065
TCONS_00021727 lncRNA downstream 884919 33250490 ~ 33255253 (+) False XLOC_010066
TCONS_00020008 lncRNA downstream 888729 33254300 ~ 33293780 (+) False XLOC_010066
TCONS_00019986 mRNA upstream 28824 32238020 ~ 32276030 (+) False XLOC_010051
TCONS_00019984 mRNA upstream 108083 32184485 ~ 32196771 (+) False XLOC_010050
TCONS_00019983 mRNA upstream 145821 32152612 ~ 32159033 (+) True XLOC_010049
TCONS_00019981 mRNA upstream 157672 32131568 ~ 32147182 (+) False XLOC_010048
TCONS_00019991 mRNA downstream 194250 32559821 ~ 32563092 (+) True XLOC_010054
TCONS_00019993 mRNA downstream 363652 32729223 ~ 32734765 (+) True XLOC_010056
TCONS_00019994 mRNA downstream 371017 32736588 ~ 32743653 (+) False XLOC_010057
TCONS_00019995 mRNA downstream 371027 32736598 ~ 32744258 (+) True XLOC_010057
TCONS_00019996 mRNA downstream 384020 32749591 ~ 32755900 (+) True XLOC_010058
TCONS_00019985 other upstream 108087 32192197 ~ 32196767 (+) True XLOC_010050
TCONS_00019968 other upstream 380930 31922787 ~ 31923924 (+) True XLOC_010039
TCONS_00019961 other upstream 468367 31829038 ~ 31836487 (+) True XLOC_010037
TCONS_00019955 other upstream 670259 31634470 ~ 31634595 (+) True XLOC_010035
TCONS_00019951 other upstream 1333697 30970501 ~ 30971157 (+) True XLOC_010029
TCONS_00019992 other downstream 307249 32672820 ~ 32672936 (+) True XLOC_010055
TCONS_00020010 other downstream 977580 33343151 ~ 33343265 (+) True XLOC_010067
TCONS_00020013 other downstream 1354398 33719969 ~ 33733378 (+) True XLOC_010069
TCONS_00020014 other downstream 1386531 33752102 ~ 33756379 (+) False XLOC_010070
TCONS_00020038 other downstream 2358997 34724568 ~ 34724682 (+) True XLOC_010085

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_09562530_09572606.mRNA True 702 mRNA 0.53 6 CI01000027 9562496 ~ 9572635 (+)