RNA id: TCONS_00019997


Basic Information

Item Value
RNA id TCONS_00019997
length 2329
RNA type mRNA
GC content 0.44
exon number 2
gene id XLOC_010059
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 32995882 ~ 33004852 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTCAAGTGTAATTCCTACCAAGGACTTCGTCTCTGAGCTCTCCTTGTCTAGAAGGTGGAGCAGATATGAGAAGAAACGGACTATACACCACGAAGCCTCTGAGATGAAATAACTTTTTTAGACGGTTCCTGCTAAATTAACAAGCATCTGTTTGCGGATTGAAACATCTCCAATCAATCGAATGATAGCAGGGGTGTCTCTGAAATGGGCCCGGTACCCTTAACGCTCCTGCTTTCCATCTCAGCACTGGCTGTGTTGGGGTCCACCACAGTGGACGATCCCACAGGTGACTACACCTGGCCACAGAGAAAAATACCACTGGTACAAGAGAAGCAAACCGTGCACCTAGAAAGTTCAGAGTTTCTGGCCAAGCCTCAAAATGATCTTCACGGAATATGTGGCATCGAGTGCCAGCAGCGTCTCCCGGAGCCCAGTCTGGATGATCTGGAGCAGCTACTGTCCTATGAGACCATGTATGACAACGGGACACGCACACTCACGACTGTCACCGTACAAGACCTAAATGTGAGCAACGACTGGACAGGAGCTTCTCAGTTGCACACTCGGCACAGACGGGAGGTCTACGGCACAGATACACGATTTACCATCACCGACAAGCAGTACTCCATGAAGTATCCCTTCTCCACTTCTGTGAAGATCTCCACGGGATGTTCTGGGGTGCTGGTGTCTCCCAAACATGTCCTGACAGCAGCTCATTGCATTCACAATGGTACGGACTACCTGGATGGGGTACAGAAACTCAGCGTTGGTGTGTTGAAAGAGCGCTCACGGCGTAAGAATGGACGGAAAGGGAAGGGACGGAAAGGAAAAGGCCAGAGAAAGCACGAGGAAGAGGAAGTTGATGAAAATGGAGAGATTGTAGAGAAGCAGCAAGAGCGTAAGAGCAAAGGTAAAGGCAGGAGGAATCGGAGCCGTCGTAGTACTGACTCAGAACAGCCCTCATTCCGATGGACAAGGGTGAAACAGATGCAGGTGCCGAAGGGATGGTTTAAAGGCATCTCTGAAAATGTTTTAGCTGATTATGATTACGCCGTCCTGGAGCTTAAGAGAGCACAGAAGACTAAATTCATGGATCTTGGAGTCATTCCCTCTGTCAAGAAGTTGCCTGCTGGTAGAATCCACTTCTCTGGTTTTGATGATGACCGACCAGGCAACTTGGTGTACCGTTTCTGCTCTGTGTCTGAGGAGTCCAACGACCTGCTGTACCAGTATTGTGATGCCAAGCCTGGCTCCAGTGGCTCGGGTGTCTACATTCGCCTCAAAGAACCAGGCAAGAAGAAGTGGAAGCGTAAGATCATTGGGGTGTTCTCAGGTCACCAGTGGGTGGATGTTAACGGGGGGCAGCAGGATTACAACGTGGCTGTCCGAATCACTCCTCTAAAGTACGCACAGATCTGCCGGTGGGTCCATGGAGACTCCAGCCAGTGTCGGGACACCTGAGAGACTCTGTCCCAGCTCCCACCAACACTTGTGCCTCCCATCCGTGCCCTACACAAACTGCTGCATTCAACAACACTAGGAACTAAAACATTCCTACCATTGAACTTTTCCAAGCTATTTTGAtaccttaatttattttattagacaACTTTTGTTAGGAATCAGATAGAGAGAATGTATTTCTAGATTCTGCTGTCCTAAACGAGAACTAATTCTGTCCTAATCTGTCGTTTTGAATTAGAAAATGTACTTCGGTCAGTGTTGTTTGCTATGGGAGGCAGTTGTTTTGTCTGGATATCTTGTAGTAGAGAGCTAAATCTGATGACCAGTTGACACAAGAAAagcaaacacctttttttcttagagaagttttcatttttatttttggattgttttcttttctttttgatttgaagaagcagtatcaaagTACTGGTGTTCTTTGAAATGGTTTTATcttgttatcattattataaatgttatgatCGTGTGCCTTTGATAGTATATAAGCTGTCTTAATGGGCTTATACAGTTGGTTCTGCCTTTAGTATCACAATGCAGGCAGTTAGAGGTTTAACCTCCTGATTTAATGTCCTTGTTGACGTTTGGTGCTAATTTAATTTTAAGATATAAAACATTTGAGGACCTGTCGGAGTAACAGCCTACTGTAGAACTGTAAGTATGTATTTAATGTAAGGCTCATATTATGAGTTTCATTCTCATGTTGTTCTTATTTGAAAAGAATTACACAGGGTTATTTAAATTTAGGTCAATGTTAACTGTCATTGTAATTGCTAAAAGAGAACGCCTTGTAGCTTAATAGGTAATACAAATGGAAAATCTTAATATAAAATTGATTTTCTCAAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005575 cellular_component cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040704-55 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Orthologous to human PRSS35 (serine protease 35).

Ensembl:

ensembl_id ENSDART00000170157

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019990 lncRNA upstream 486424 32397507 ~ 32509458 (+) True XLOC_010053
TCONS_00019989 lncRNA upstream 630311 32304854 ~ 32365571 (+) False XLOC_010052
TCONS_00021971 lncRNA upstream 681314 32278999 ~ 32314568 (+) False XLOC_010052
TCONS_00021973 lncRNA downstream 54047 33058899 ~ 33063159 (+) True XLOC_010060
TCONS_00021974 lncRNA downstream 175254 33180106 ~ 33214537 (+) True XLOC_010065
TCONS_00021727 lncRNA downstream 245638 33250490 ~ 33255253 (+) False XLOC_010066
TCONS_00020008 lncRNA downstream 249448 33254300 ~ 33293780 (+) False XLOC_010066
TCONS_00020009 lncRNA downstream 250227 33255079 ~ 33288208 (+) False XLOC_010066
TCONS_00019996 mRNA upstream 239982 32749591 ~ 32755900 (+) True XLOC_010058
TCONS_00019995 mRNA upstream 251624 32736598 ~ 32744258 (+) True XLOC_010057
TCONS_00019994 mRNA upstream 252229 32736588 ~ 32743653 (+) False XLOC_010057
TCONS_00019993 mRNA upstream 261117 32729223 ~ 32734765 (+) True XLOC_010056
TCONS_00019991 mRNA upstream 432790 32559821 ~ 32563092 (+) True XLOC_010054
TCONS_00019998 mRNA downstream 104644 33109496 ~ 33119626 (+) False XLOC_010061
TCONS_00019999 mRNA downstream 107095 33111947 ~ 33115234 (+) True XLOC_010061
TCONS_00020000 mRNA downstream 116254 33121106 ~ 33141934 (+) False XLOC_010062
TCONS_00020001 mRNA downstream 116408 33121260 ~ 33140580 (+) True XLOC_010062
TCONS_00020002 mRNA downstream 137882 33142734 ~ 33152582 (+) False XLOC_010063
TCONS_00019992 other upstream 322946 32672820 ~ 32672936 (+) True XLOC_010055
TCONS_00019985 other upstream 799115 32192197 ~ 32196767 (+) True XLOC_010050
TCONS_00019968 other upstream 1071958 31922787 ~ 31923924 (+) True XLOC_010039
TCONS_00019961 other upstream 1159395 31829038 ~ 31836487 (+) True XLOC_010037
TCONS_00019955 other upstream 1361287 31634470 ~ 31634595 (+) True XLOC_010035
TCONS_00020010 other downstream 338299 33343151 ~ 33343265 (+) True XLOC_010067
TCONS_00020013 other downstream 715117 33719969 ~ 33733378 (+) True XLOC_010069
TCONS_00020014 other downstream 747250 33752102 ~ 33756379 (+) False XLOC_010070
TCONS_00020038 other downstream 1719716 34724568 ~ 34724682 (+) True XLOC_010085
TCONS_00020039 other downstream 2202003 35206855 ~ 35280788 (+) True XLOC_010087

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_09958003_09959274.mRNA True 4222 mRNA 0.40 2 CI01000027 9955825 ~ 9960262 (+)