RNA id: TCONS_00020001


Basic Information

Item Value
RNA id TCONS_00020001
length 1181
RNA type mRNA
GC content 0.45
exon number 5
gene id XLOC_010062
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 33121106 ~ 33141934 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTGCTACAAATCTGGCACTTGGTGTTTAAACCGGTGTGCGATCGTAGGGGGAGCCTTCGATTTCGTACGAAGCTccgtttaaaaaaactgttataaagTCAGTTTACAAAGGGAATTCGACGCGTTTTACCAACTAAACGCTGTTGTTTTACCGTCTGATTTGTTTATTGTGTTGTTAAATAAACGATCATGGCTTGTGGCGCGACGTTGAAGCGATCTATGGAGTTTGAGGCCCTTCTCAGCCCGCAGTCCCCCAAGCGGAGGAGGTGCAATCCTCTACCGGGGACTCCGACTACTCCTTCCCCGCAGAGGTGCAGTCTTCGTCCGTCAACAGAGAGCCCAGCACACTCGATGTCGCCTCAGTCTATGGGTGGAGAGCACAGGCTAACCCCAGAGCAGATCTTCCAGAACATTCGTCAGGAGTACAGTCGCTATCAGAGGCGACGACAGTTGGAAGGGGCCTTTAACCAGACCGAGCCCTGCAGCTCCACCGATATCCAGAGCTCCAGTCCCGCCCTTACCTCCCCCAGTTCTCCCACAGgtgCCTCATCATTGAAGAAGGATCAGCCACTGTTCACACTGAGGCAGGTTGGCTATTTGTGTGAGCGCCTTATCAAAGATCACGAGGAGAAGATGCGTGAAGAGTACGAACAAATACTGAACACAAAGCTTGCAGAACAATACGAGTCCTTCGTGAAATTCACACAGGATCAGATTATGCGAAGATATGGTGCCAGGCCTGCAAGCTATGTGTCTTGAAGAACATTATAGATGGTACTTGCCATCCCTCAGCAGCTGGTTGCTACAGAACCAGCTTCCTTTGTTTCACTTGAAATTTCCTCCATTCTTTTGATtctatttttttctcctttaaaATGCTTGGGTGCCATGTTCTATCCACATTTAACTCATTTTTATTGCTGAACTGTTACTGATGGCCCAACACCAAACATGCATATCTAGATGCATTCTAAGAAGGTTTAATCTCTTTAAGAATTTCTGAGAAAAGATGTCAACTATCGCTGTAAAAAGCTTGACTGATGCGATCATCTCTGTATAATGTAACGTGACTGATCTGCAGCAGATTTACCTGACTCTCCCTCTATCCTTCGGTCTGTTTTTTAACTCTTCacctcctttttttctttttttgacaaataaaatatCTGTGATAAGTCA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2178 Predicted to enable transcription coregulator activity. Predicted to be involved in several processes, including myoblast migration involved in skeletal muscle regeneration; positive regulation of lamellipodium assembly; and positive regulation of macrophage chemotaxis. Predicted to be active in chromatin and nucleus. Orthologous to human AKIRIN1 (akirin 1).

Ensembl:

ensembl_id ENSDART00000058472

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021973 lncRNA upstream 58101 33058899 ~ 33063159 (+) True XLOC_010060
TCONS_00019990 lncRNA upstream 611802 32397507 ~ 32509458 (+) True XLOC_010053
TCONS_00019989 lncRNA upstream 755689 32304854 ~ 32365571 (+) False XLOC_010052
TCONS_00021974 lncRNA downstream 39526 33180106 ~ 33214537 (+) True XLOC_010065
TCONS_00021727 lncRNA downstream 109910 33250490 ~ 33255253 (+) False XLOC_010066
TCONS_00020008 lncRNA downstream 113720 33254300 ~ 33293780 (+) False XLOC_010066
TCONS_00020009 lncRNA downstream 114499 33255079 ~ 33288208 (+) False XLOC_010066
TCONS_00021728 lncRNA downstream 150839 33291419 ~ 33293780 (+) True XLOC_010066
TCONS_00019998 mRNA upstream 1634 33109496 ~ 33119626 (+) False XLOC_010061
TCONS_00019999 mRNA upstream 6026 33111947 ~ 33115234 (+) True XLOC_010061
TCONS_00019997 mRNA upstream 116408 32995882 ~ 33004852 (+) True XLOC_010059
TCONS_00019996 mRNA upstream 365360 32749591 ~ 32755900 (+) True XLOC_010058
TCONS_00019995 mRNA upstream 377002 32736598 ~ 32744258 (+) True XLOC_010057
TCONS_00020002 mRNA downstream 2154 33142734 ~ 33152582 (+) False XLOC_010063
TCONS_00020003 mRNA downstream 2923 33143503 ~ 33149234 (+) False XLOC_010063
TCONS_00020004 mRNA downstream 3050 33143630 ~ 33151289 (+) False XLOC_010063
TCONS_00020005 mRNA downstream 3532 33144112 ~ 33154518 (+) False XLOC_010063
TCONS_00020006 mRNA downstream 3726 33144306 ~ 33152578 (+) True XLOC_010063
TCONS_00019992 other upstream 448324 32672820 ~ 32672936 (+) True XLOC_010055
TCONS_00019985 other upstream 924493 32192197 ~ 32196767 (+) True XLOC_010050
TCONS_00019968 other upstream 1197336 31922787 ~ 31923924 (+) True XLOC_010039
TCONS_00019961 other upstream 1284773 31829038 ~ 31836487 (+) True XLOC_010037
TCONS_00019955 other upstream 1486665 31634470 ~ 31634595 (+) True XLOC_010035
TCONS_00020010 other downstream 202571 33343151 ~ 33343265 (+) True XLOC_010067
TCONS_00020013 other downstream 579389 33719969 ~ 33733378 (+) True XLOC_010069
TCONS_00020014 other downstream 611522 33752102 ~ 33756379 (+) False XLOC_010070
TCONS_00020038 other downstream 1583988 34724568 ~ 34724682 (+) True XLOC_010085
TCONS_00020039 other downstream 2066275 35206855 ~ 35280788 (+) True XLOC_010087

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_10055186_10067131.mRNA True 487 mRNA 0.56 3 CI01000027 10055186 ~ 10067131 (+)
eurasian perch (Perca fluviatilis) TU114962 True 437 lncRNA 0.47 2 NC_053119.1 16654938 ~ 16655754 (-)
mexican tetra (Astyanax mexicanus) TU114962 True 1235 lncRNA 0.53 5 NC_035905.1 32375381 ~ 32391412 (+)