RNA id: TCONS_00001571


Basic Information

Item Value
RNA id TCONS_00001571
length 1872
RNA type mRNA
GC content 0.38
exon number 5
gene id XLOC_000990
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 7993632 ~ 8000428 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACTGGAGACACCATGGAGGTCATTTGACTGGGGACAAAAAGAAGCCCTGAGAAAATGGCTGGAAAACTTCACTCTGAGTGATCCAAATGTAAAAGACATCAAGATACTGGTAGTTGGACCATCAGGAGCAGGAAAGTCCAGCTTTATAAACTCCATCAACAGTGTCTTTCAAAGACGGATCTCCTCTAAAGCACTAGTTAACTCTGCTGGAGGAGACAATCATAGTTTTACAGAAAAGGTAGGTATTTActacttaaaaaaagtttaatgcaGTGGGATTTTAATCTAATTGTTTGAGAATTTATTTGAAAATGGTTTGCAAAATATCTGGTCTTGATTTCTAGCTCAAGAGACTTACCATCAAAAATGGGAAAACATCTTTGCCCTTCGTCTTCTTCGACATCATGGGTTTAGAAGCTGAAGAATTTCATGGATCAAAAACAGAAGATATCATCAAAGCTGTGTTTGGCCATGTGAAAGACGGCTATAAATTCAACGAGGAGCAGTCAATCGATTATAAGGATCAACATTACACCAGTGACCCCAGCCTCTCCGACCAGTGTTTCTGTGTGGTTTACATCATAGATGGAAAAATAGTTCAGTACACAGAAGATCGACTGATTAAAAAGTTGAAGATCATCCGCAAGAAAATCAGTGATAAGGGCATTGCTCAAGTGGTTGTCATGACCAAAGTGGATGAAGCATGTCCACTGGTCAAAAATGATCTAAGGAAGGTCTACTCGAGCAAGAAGATCAAAGAGAAGATGGAGCTGTGCAGTGCCCACACTGGTGTGCCAATGACAAACATCTTCCCAGTGAAGAATTACCATGATGAGATCGACACAAAAGATGATGTTGATGTTCTGATACTGAAGGCTCTTGAACAGATTGTTCACAATGCCAATGACAGATTGGAGGATAATGAAACCTACtgaaatggtaataatacatGTAATTCTTTAAACGCTAAACAATTTCTTTATCTGTTCAAATTATCTGTCAGTTTCTTTTATCTTTAGCTGGAGTACCCATCAGACTCACTAGAGGGCActtcatatacagtatgtacaccaGACATTCTCCCTGACTACACATCCCATCATGCTTTGTGCATAATCAGACTTTAATTACCTGCTATAGCTGATATCAATCTGGACATTGACATTTACACCGACTGCACACACCATACAGTGTAAGCACCACATTCACACTCAGTCTTGTATTTCTGTGCAATTAGTATTTTCCTGGTTTATTTCTTTTCGTGGATATTGATTGAACCTCTGCCAGTTTTTTTGGATTACTCTCTTTGGGTTacctttttttttgtactgtttgCTCCTGTTGACCCTAGCCTGTCTGACCATCCTTGTTTAAATAAAGCTGCGTTTGTAAGTTCATGTATGGCATGTATTTTGAATGAGTGTGCTGCCAGTCAAGGGTgtgaagaaaaaaagaacaagGCATTAAACTTTATGGTTACTCTGTGTTTGTCATCTAATGACTCaattacaaaacataaataaaacataacattGTGTTAGAAGTGGGAAATTAGAAATGAGGTTCTCATACTGTCCTGTAGGGCCAGTGttctgctgattttagctccaacttgcctcgccacacctgcaaggatgtttcttgaAAGAGTGTGAGTTGATTTGTGCTAATCTTTTTAgagattctattctattctattttaaaatGGAAAGCCAATGAAGAGAAACCAGTATGAGTGTAATGTGTTCTCATATAAGTATTCCTGTCAACAAACATGTGGTGGCATGTAAGGGAGGCATGGGTAACTAATAAAGGGCATTACAATAATCCAGATCAAgtcaaataaaatatgtataccTCCTTCGAAAAGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000185901

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002909 lncRNA downstream 72930 7915480 ~ 7920702 (-) False XLOC_000984
TCONS_00003330 lncRNA downstream 72932 7915480 ~ 7920700 (-) False XLOC_000984
TCONS_00003331 lncRNA upstream 203897 8202390 ~ 8205228 (-) True XLOC_000996
TCONS_00003332 lncRNA upstream 506484 8504977 ~ 8507689 (-) False XLOC_000998
TCONS_00001581 lncRNA upstream 507929 8506422 ~ 8510066 (-) True XLOC_000998
TCONS_00001583 lncRNA upstream 544659 8543152 ~ 8543611 (-) False XLOC_000999
TCONS_00001584 lncRNA upstream 545194 8543687 ~ 8545359 (-) False XLOC_000999
TCONS_00001569 mRNA downstream 17877 7968092 ~ 7975755 (-) False XLOC_000989
TCONS_00001568 mRNA downstream 22979 7964276 ~ 7970653 (-) False XLOC_000989
TCONS_00001567 mRNA downstream 42630 7946842 ~ 7951002 (-) True XLOC_000988
TCONS_00001566 mRNA downstream 54118 7936270 ~ 7939514 (-) True XLOC_000987
TCONS_00001565 mRNA downstream 62953 7924956 ~ 7930679 (-) True XLOC_000986
TCONS_00001573 mRNA upstream 2942 8001435 ~ 8012476 (-) True XLOC_000991
TCONS_00001574 mRNA upstream 18576 8017069 ~ 8020589 (-) True XLOC_000992
TCONS_00001575 mRNA upstream 23827 8022320 ~ 8101495 (-) True XLOC_000993
TCONS_00001576 mRNA upstream 129182 8127675 ~ 8140763 (-) False XLOC_000994
TCONS_00001577 mRNA upstream 136451 8134944 ~ 8141135 (-) True XLOC_000994
TCONS_00001570 other downstream 17863 7970406 ~ 7975769 (-) True XLOC_000989
TCONS_00001564 other downstream 73426 7920119 ~ 7920206 (-) True XLOC_000985
TCONS_00001563 other downstream 74065 7919480 ~ 7919567 (-) True XLOC_000984
TCONS_00001562 other downstream 74750 7918795 ~ 7918882 (-) False XLOC_000984
TCONS_00001556 other downstream 191986 7801531 ~ 7801646 (-) True XLOC_000982
TCONS_00001587 other upstream 554257 8552750 ~ 8553298 (-) True XLOC_000999
TCONS_00001595 other upstream 651616 8650109 ~ 8652655 (-) False XLOC_001004
TCONS_00001610 other upstream 1119607 9118100 ~ 9118671 (-) False XLOC_001012
TCONS_00001617 other upstream 1199366 9197859 ~ 9197966 (-) True XLOC_001018
TCONS_00001629 other upstream 1461517 9460010 ~ 9486080 (-) False XLOC_001025

Expression Profile

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