RNA id: TCONS_00020006


Basic Information

Item Value
RNA id TCONS_00020006
length 2185
RNA type mRNA
GC content 0.37
exon number 7
gene id XLOC_010063
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 33142734 ~ 33154518 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aGATAGAGAAATGGGCGATAATGACACCGAAGAGCAAGACTCTTTGCAGAAGGACGAAGAAGCTGGTAACCGAGACAATCCGGTCAGAAGAGTTCGGAGGGTCGAGAAGTTTCATAAGAATGTTTCTAAATGGATGCTTCCCGAGGAGTTACATGAGACTTATCTGGAACGGGCGAACTGCTGTCCGCCACCgatcttcatcatcctcatcagtTTAGCAGAGCTGGCTGTGTTTATCTACTACGCTGTATGGAAGCCTCAAAAACAGTGGATAACTCTAGGAACTGGGATCTGGGATAGTCCTCTTACCTATAGACCAGAACAACGCAAGGAGGCTTGGCGCTTTGTTTCCTACATGTTTGTACATGCCGGGGTGGAGCATATCATGGGGAacttattaatgcagcttcttctggGTATTCCTCTGGAACTGGTCCATAAAGGCTTTGAAGTTGGCATGGTGTACATGTGTGGGGTCCTCGCAGGGTCTCTGGCCAGCTCCATCTTTGATCCTTTCAGTGCTCTTGTGGGAGCTTCAGGTGGTGTTTATGCCCTTATGGGTGGCTACTTCATGAATGCCATTGTGAATTTCCGGGAGATGAGAGTTCTTCTAGGAGTGTTTCGCATCTTATTGATTGTTCTGATTGttggAACAGATGTTGGATTTGCTCTTTATAGAAGGTTCATTGTCCACGAGGCTGGCCTGAAGGTCTCTTTTGTGGCTCATATTGGCGGTGGCATAGCAGGCATGACCATTGGTTATGTGTTTTTCACCAACTACAATAAAGAGCTTCTAAAAGACCCACGCTTCTGGATGTGCATTGTGGGATACATCGTCTTCTTACTGTTTGCAGTCATTTTCAATATCTTCTTGTCCCCAGCACCCGCATGAGGTCATCAATGGACAGTcgaagcttttttttatttttataaaagaatcAGGTCAACACAACTGTCAGACAATCCTGTTGGTATTTATAGACCCATAAAGGGTTAGTTTAACTTAAACTGAAAACTCTGTATTGTCCCATATTGTTCCCTCAGGTAAGAAGCTCATCTTTGaaacacaaacgaagatatttttaaatcaaatctgAGTGATTTAGTTTCTTCTATTAAGAATCTGTTTACCCCACACCTTTGACTATGAAAGGATCAGAATCCATATAAATAGGTTcacattttatgaataaatagatttaattttGGTTTACATTTCAGAAATATGGATTTGGAAATCTGTAGGGTTTCATTAAAAGTATCCTAATTTGTGTATTGAAGATAGGAAGATTTCTTATGGGTTTGGAATGAGATGAGGGAGTAAATTCACATTTTACACTGAACTAACCCTTCAGGAAATATGCTAACACACTACAAGCACATCTAAAGAAAGTAACTGTCatattttggatattttttaaatgtaattattttaatgtcatgtaatttatgttttttgtttagttttgtattgttttgcttaACACATGTCCTCAAGTAATGTATTGCCTCAGggaaaaaatatgataaaaaagcatctattttttattgtttgggttttaCAAAATCATTGAGCATTTCTGGACTGGCCAACATTTTTAATTCATGACTAAACAGCTTGGTTTATTTGAATTCAGTTCAATTTGTTTGGAGATAAATGCATTTAAAGTTcaccaaaaaatctaaattttatcaTCATATATACACcctttacttgttacaaacctttcattcttctgttaaacacaaaacaagatattgtgaagaattttgaaaaccagtaaccatcgactttcaaagtacaacattctttaaaacatcttcattCGTGTTTAGAGAACGtttttgtacttaaaaaaaaaactcataaatgttaGAGGAATTTGTGAGTAAATTTTGATTTGAGGGTtaactgtttctttaaaaaattagAGGTGTCATTTTGATACCAATAGAGGGCAGCATTGATCAGCATGTGGGCATAGGAAGACGCTGACCTATAATTAGTAGGAAATTGTAAAATCAGTGCTAATGACATGCATCTGTATTTACCCTACGTATTTGTCCCTAATTatcaaatcatttattttcagaaatggGTTTGGGTTGGGAATGTTTTGGCCATATGAAGGCCATATagtctttttaaaatgaaataataataaaaaaatggtgCCAATGTTTT

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-732 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in epidermis; otic vesicle; pectoral fin; pharyngeal arch; and sensory system. Orthologous to human RHBDL2 (rhomboid like 2).

Ensembl:

ensembl_id ENSDART00000101953

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021973 lncRNA upstream 81147 33058899 ~ 33063159 (+) True XLOC_010060
TCONS_00019990 lncRNA upstream 634848 32397507 ~ 32509458 (+) True XLOC_010053
TCONS_00019989 lncRNA upstream 778735 32304854 ~ 32365571 (+) False XLOC_010052
TCONS_00021974 lncRNA downstream 27528 33180106 ~ 33214537 (+) True XLOC_010065
TCONS_00021727 lncRNA downstream 97912 33250490 ~ 33255253 (+) False XLOC_010066
TCONS_00020008 lncRNA downstream 101722 33254300 ~ 33293780 (+) False XLOC_010066
TCONS_00020009 lncRNA downstream 102501 33255079 ~ 33288208 (+) False XLOC_010066
TCONS_00021728 lncRNA downstream 138841 33291419 ~ 33293780 (+) True XLOC_010066
TCONS_00020000 mRNA upstream 2372 33121106 ~ 33141934 (+) False XLOC_010062
TCONS_00020001 mRNA upstream 3726 33121260 ~ 33140580 (+) True XLOC_010062
TCONS_00019998 mRNA upstream 24680 33109496 ~ 33119626 (+) False XLOC_010061
TCONS_00019999 mRNA upstream 29072 33111947 ~ 33115234 (+) True XLOC_010061
TCONS_00019997 mRNA upstream 139454 32995882 ~ 33004852 (+) True XLOC_010059
TCONS_00020007 mRNA downstream 11280 33163858 ~ 33179119 (+) True XLOC_010064
TCONS_00020011 mRNA downstream 440538 33593116 ~ 33595985 (+) True XLOC_010068
TCONS_00020012 mRNA downstream 503312 33655890 ~ 33736831 (+) False XLOC_010069
TCONS_00020015 mRNA downstream 749428 33902006 ~ 33925877 (+) False XLOC_010071
TCONS_00020016 mRNA downstream 749484 33902062 ~ 33919790 (+) True XLOC_010071
TCONS_00019992 other upstream 471370 32672820 ~ 32672936 (+) True XLOC_010055
TCONS_00019985 other upstream 947539 32192197 ~ 32196767 (+) True XLOC_010050
TCONS_00019968 other upstream 1220382 31922787 ~ 31923924 (+) True XLOC_010039
TCONS_00019961 other upstream 1307819 31829038 ~ 31836487 (+) True XLOC_010037
TCONS_00019955 other upstream 1509711 31634470 ~ 31634595 (+) True XLOC_010035
TCONS_00020010 other downstream 190573 33343151 ~ 33343265 (+) True XLOC_010067
TCONS_00020013 other downstream 567391 33719969 ~ 33733378 (+) True XLOC_010069
TCONS_00020014 other downstream 599524 33752102 ~ 33756379 (+) False XLOC_010070
TCONS_00020038 other downstream 1571990 34724568 ~ 34724682 (+) True XLOC_010085
TCONS_00020039 other downstream 2054277 35206855 ~ 35280788 (+) True XLOC_010087

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_10072946_10084310.mRNA True 1467 mRNA 0.38 5 CI01000027 10072437 ~ 10084566 (+)