RNA id: TCONS_00020007


Basic Information

Item Value
RNA id TCONS_00020007
length 2324
RNA type mRNA
GC content 0.44
exon number 7
gene id XLOC_010064
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 33163858 ~ 33179119 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATAATAAGTTTGCTCACATCCTTTTAGCATAAGGAGGTTTTATGTTTGTTTACTCGGCGTTTATTTCATGTTGATTGGATTACTAATAATTGGGGAGGTTAAAATTTAACGGGGTTGGGGAGGGGGGTCAACATGTCGATCCAGTACGAGGCACCGCTGGCGGACAGCTACGGAGTGGCGGACTCGTTTCCCAAAGATTTCGGATATGGGGAAGAGGAGGGAGACATTGAGGACAGTCCTTCTCCCTCCGACAGTAAACCAAGAATCCTGCTAATGGGGTTGAGGAGGAGCGGGAAGTCCTCTATCCAGAAGGTGGTGTTTCATAAGATGTCGCCCAATGAGACCCTCTTCCTGGAAAGCACCAACAAGATCTATAAGGATGACATCTCCAGCAGTTCCTTTGTCAACTTCCAGATCTGGGACTTCCCGGGACAAGTGGACTTTTTTGATCCAACTTTTGATTACGAGATGATCTTCAGAGGAACTGGAGCTTTGATATTTGTCATCGACGCTCAGGATGACTATGTGGAGGCTCTTAGTCGACTCCACCTAACAGTATCGCGGGCCTACAGAGTGAACCCTGAGATCAACTTTGAAGTGTTCATCCATAAAGTAGATGGCCTGTCTGATGACCATAAGATCGAGACCCAGCGGGACATACATCAGAGGGCTAATGATGACCTGGCAGATGCAAGCTTAGAGAAACTACATCTCAGtTTCTATTTGACGAGTATATACGATCACTCTATCTTCGAGGCCTTCAGTAAAGTTGTCCAGAAGCTCATCCCTCAGCTTCCCACGCTGGAGAACCTTCTCAACATCTTTATATCTAATTCAGGGATCGAGAAGGCCTTCCTGTTTGACGTCGTCAGTAAGATTTACATTGCCACTGACAGTTCACCGGTGGACATGCAGTCCTATGAGCTCTGCTGTGACATGATCGATGTGGTCATTGACGTGTCCTGTATTTATGGATTAAAAGAGGACGGCAGTGGCAGTGCATATGATAAGGAATCTATGGCCATCATCAAACTCAACAACACCACAGTGCTCTACCTGAAAGAAGTCACCAAGTTCCTCGCTCTGGTCTGCATCCTGAGAGAAGAGAGCTTTGAGCGCAAAGGATTAATAGACTACAATTTCCACTGTTTCCGGAAAGCCATTCATGAGGTGTTCGAGGTGGGAGTTTCCACCTCAAGGACAAGCAACCAGCCAGTTGGCACCCCTCTTATGAAAACTGTTGCCTTAAATGGAACCCCAAGGAGCACTGTGTAGAGAGAAGGTGATAAAGACAATAATGAAAAGTGTGGAGAAGATGGATAAGGTAATAAAAGAGAAAGACTACAGGATGGGCCGCATTCTGAGTATGCTGACCATCATTAATGCTCCCAAAAGCTTTATAAGCAAAAGAGTCACTAAAACAAACATGCTGCAGTGTGTGGGGCAGAATTGTAATGTGGGTAAGCTTGCAAAGCCACGCATGTATGGAAGGGAAGAGGCACAAAAGAAGGTGGAACACTTTTTTTGTGACTAAAAGGCATTAACAAACTGTTCCTCAAGACAACATGTTAAACAAAAGTGCAAGTCACTGGGGGGAAAAGCACAGCAAGAAACCTCACCCTGTCAGGTTGAACCTCCTGACAACTTGGATGAATGCTGTATGATATGTTGCTGGTCACTTAACACAGTAGCCAAGTTTAAACTGGTTTACTCCTAAACACATGAATGTGGCAGACGTCTGTGAAAATTTTGCAGTGCACAACAATATTGAGTGTATACTTCTGAAGCCTTATGTAGAGTTGTCCTAATGCAAGCCCCTAATGCACATATGCACACTTGGTCACCCAAATGTTTTGTGTATGAAAGGGACTGAAATGTGATTTAATGTGTCTCGACTGTGGGAGCTAATGCATGTATGTGGTGGAAATGGTGGGTGGGTGTTGTGTATGCACACTGGCTTGGGGCCCAGAGATGTTGTGACATCTCACACAAGAATGAGGAGGAGTTGTGCTGTTCCAACTGACCTCTGGGACACTGTGATTGCACTTACCTCAGAGGATTTCAGGGATCCTAACTAACAcaatttaaactgcttttgctGTACTGTTGCCCTTCAGTTACGTTACAGCATCTTTGGAGGATAGATCATGCAATCCTAGCACTTTGTAGGATGAACCTTAATTACTTACATTCCGGTTCTGAGGTGCCAATGCAGTTTTGCTCGCATTAAAACTTTGTAATACTTGCTTTCACTTTTCCCGATCACCAATCAGCATGTTGTTTTTAATTCTGATGAAATCTGCtgtaaaataaagataataaa

Function

GO:

id name namespace
GO:0009267 cellular response to starvation biological_process
GO:0010506 regulation of autophagy biological_process
GO:0071230 cellular response to amino acid stimulus biological_process
GO:0032008 positive regulation of TOR signaling biological_process
GO:0005764 lysosome cellular_component
GO:0034448 EGO complex cellular_component
GO:1990131 Gtr1-Gtr2 GTPase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-355 Predicted to enable GTPase activity. Predicted to be involved in several processes, including cellular response to amino acid stimulus; cellular response to starvation; and positive regulation of TOR signaling. Predicted to be located in cytoplasm. Predicted to be part of Gtr1-Gtr2 GTPase complex. Predicted to be active in lysosome and nucleus. Orthologous to human RRAGC (Ras related GTP binding C).

Ensembl:

ensembl_id ENSDART00000101943

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021973 lncRNA upstream 100699 33058899 ~ 33063159 (+) True XLOC_010060
TCONS_00019990 lncRNA upstream 654400 32397507 ~ 32509458 (+) True XLOC_010053
TCONS_00019989 lncRNA upstream 798287 32304854 ~ 32365571 (+) False XLOC_010052
TCONS_00021974 lncRNA downstream 987 33180106 ~ 33214537 (+) True XLOC_010065
TCONS_00021727 lncRNA downstream 71371 33250490 ~ 33255253 (+) False XLOC_010066
TCONS_00020008 lncRNA downstream 75181 33254300 ~ 33293780 (+) False XLOC_010066
TCONS_00020009 lncRNA downstream 75960 33255079 ~ 33288208 (+) False XLOC_010066
TCONS_00021728 lncRNA downstream 112300 33291419 ~ 33293780 (+) True XLOC_010066
TCONS_00020005 mRNA upstream 9340 33144112 ~ 33154518 (+) False XLOC_010063
TCONS_00020002 mRNA upstream 11276 33142734 ~ 33152582 (+) False XLOC_010063
TCONS_00020006 mRNA upstream 11280 33144306 ~ 33152578 (+) True XLOC_010063
TCONS_00020004 mRNA upstream 12569 33143630 ~ 33151289 (+) False XLOC_010063
TCONS_00020003 mRNA upstream 14624 33143503 ~ 33149234 (+) False XLOC_010063
TCONS_00020011 mRNA downstream 413997 33593116 ~ 33595985 (+) True XLOC_010068
TCONS_00020012 mRNA downstream 476771 33655890 ~ 33736831 (+) False XLOC_010069
TCONS_00020015 mRNA downstream 722887 33902006 ~ 33925877 (+) False XLOC_010071
TCONS_00020016 mRNA downstream 722943 33902062 ~ 33919790 (+) True XLOC_010071
TCONS_00020017 mRNA downstream 751745 33930864 ~ 33937924 (+) False XLOC_010072
TCONS_00019992 other upstream 490922 32672820 ~ 32672936 (+) True XLOC_010055
TCONS_00019985 other upstream 967091 32192197 ~ 32196767 (+) True XLOC_010050
TCONS_00019968 other upstream 1239934 31922787 ~ 31923924 (+) True XLOC_010039
TCONS_00019961 other upstream 1327371 31829038 ~ 31836487 (+) True XLOC_010037
TCONS_00019955 other upstream 1529263 31634470 ~ 31634595 (+) True XLOC_010035
TCONS_00020010 other downstream 164032 33343151 ~ 33343265 (+) True XLOC_010067
TCONS_00020013 other downstream 540850 33719969 ~ 33733378 (+) True XLOC_010069
TCONS_00020014 other downstream 572983 33752102 ~ 33756379 (+) False XLOC_010070
TCONS_00020038 other downstream 1545449 34724568 ~ 34724682 (+) True XLOC_010085
TCONS_00020039 other downstream 2027736 35206855 ~ 35280788 (+) True XLOC_010087

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_10098742_10105152.mRNA True 1329 mRNA 0.46 7 CI01000027 10098712 ~ 10105308 (+)
bowfin (Amia calva) AMCG00010919 True 5319 mRNA 0.45 7 CM030133.1 4557553 ~ 4569654 (-)