RNA id: TCONS_00020008



Basic Information


Item Value
RNA id TCONS_00020008
length 797
lncRNA type lincRNA
GC content 0.48
exon number 4
gene id XLOC_010066
representative False

Chromosome Information


Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 33250490 ~ 33293780 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ATTACATTTGAATTACATTCTAATGACAGCTATGAAAGTTTTAAATTAGCTAACTAAAGAATTTCCCGCCTCGGCTCAAGGATACAGTCTATGCCAAACCTAGTCAGTCGAGCTGCAACGGTTTACGTCGACGACCGCCTCAGTGGTTCAGGGCTCTGAAGTAAATGTTCTCTAAACTTATATGTTTTCTAAATTGTTGTTGCTAGCATCTGGAATCTTGATTTAAGATCGTGAATGTTTTTGTTCATCGGGACAACTTAACTTTTTCATGATGTGAAAAACTGAGGGCTGCTTCGACGGTGAGGTGAATTCGATTCCGGTCTGTTCAAGTCAGCTGATGGGTTTGTTCAACAAGTTCTGTCTGCAATATTTCAGCGAGGATGACAATCAGATATTCCAGTGGACCAGACATTCACTATTTTGAGGTGGAGAGTCCCTGTGGGGCCCATGAAGCTACTGTGCCACCGCAGTCTTAACAGCTTCTGCAGACTCCAGCGGGATGCGTCCACTGATAGAGGAAGCCCAGGAGAACAACAGAGACAGAACAATCCTGCAGCAGCCGAGTCCATCCAGGGCTGCTGTTGGTCAGGCCGTGCCTGAAGCTGGAGCTGCGGTGTGCTGGTGCCGAGGTCAGACGCTGCCACTGTGGGTTAGGCTGCTGGTCTGATCCGTGTTGACAGTGCAGATTCCTGTCAAGCCCAAGGAGACAAGCAGTGCTTCCAGCTAGAGAGTGAACCTTCGCACTGACCACTGCTGGAAGGATGGGTGAGTCACATCTCCAGTCTTCCATTCGATCG

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000194098

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00021974 lncRNA upstream 39763 33180106 ~ 33214537 (+) True XLOC_010065
TCONS_00021973 lncRNA upstream 191141 33058899 ~ 33063159 (+) True XLOC_010060
TCONS_00019990 lncRNA upstream 744842 32397507 ~ 32509458 (+) True XLOC_010053
TCONS_00019988 lncRNA upstream 939732 32304932 ~ 32314568 (+) False XLOC_010052
TCONS_00021975 lncRNA downstream 458581 33752361 ~ 33756379 (+) True XLOC_010070
TCONS_00020020 lncRNA downstream 646210 33939990 ~ 33943728 (+) True XLOC_010073
TCONS_00020024 lncRNA downstream 698539 33992319 ~ 33993459 (+) False XLOC_010076
TCONS_00021976 lncRNA downstream 1021982 34315762 ~ 34321379 (+) True XLOC_010080
TCONS_00021977 lncRNA downstream 1026109 34319889 ~ 34323007 (+) True XLOC_010081
TCONS_00020007 mRNA upstream 75181 33163858 ~ 33179119 (+) True XLOC_010064
TCONS_00020005 mRNA upstream 99782 33144112 ~ 33154518 (+) False XLOC_010063
TCONS_00020006 mRNA upstream 101722 33144306 ~ 33152578 (+) True XLOC_010063
TCONS_00020004 mRNA upstream 103011 33143630 ~ 33151289 (+) False XLOC_010063
TCONS_00020003 mRNA upstream 105066 33143503 ~ 33149234 (+) False XLOC_010063
TCONS_00020011 mRNA downstream 299336 33593116 ~ 33595985 (+) True XLOC_010068
TCONS_00020012 mRNA downstream 362110 33655890 ~ 33736831 (+) False XLOC_010069
TCONS_00020015 mRNA downstream 608226 33902006 ~ 33925877 (+) False XLOC_010071
TCONS_00020016 mRNA downstream 608282 33902062 ~ 33919790 (+) True XLOC_010071
TCONS_00020017 mRNA downstream 637084 33930864 ~ 33937924 (+) False XLOC_010072
TCONS_00019992 other upstream 581364 32672820 ~ 32672936 (+) True XLOC_010055
TCONS_00019985 other upstream 1057533 32192197 ~ 32196767 (+) True XLOC_010050
TCONS_00019968 other upstream 1330376 31922787 ~ 31923924 (+) True XLOC_010039
TCONS_00019961 other upstream 1417813 31829038 ~ 31836487 (+) True XLOC_010037
TCONS_00019955 other upstream 1619705 31634470 ~ 31634595 (+) True XLOC_010035
TCONS_00020010 other downstream 49371 33343151 ~ 33343265 (+) True XLOC_010067
TCONS_00020013 other downstream 426189 33719969 ~ 33733378 (+) True XLOC_010069
TCONS_00020014 other downstream 458322 33752102 ~ 33756379 (+) False XLOC_010070
TCONS_00020038 other downstream 1430788 34724568 ~ 34724682 (+) True XLOC_010085
TCONS_00020039 other downstream 1913075 35206855 ~ 35280788 (+) True XLOC_010087

Expression Profile


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