RNA id: TCONS_00020014


Basic Information

Item Value
RNA id TCONS_00020014
length 1453
RNA type processed_transcript
GC content 0.39
exon number 4
gene id XLOC_010070
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 33752102 ~ 33756379 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atacccagccggcacacgaccgaccttcaacgttgaaatatggttgaaataaggtcagttgtgttttgaacgttgaaataatgttgatagaacgtttaatgttgaatggttgaaaaacagcctgcatatgacaaggcttcaacgttgaaatgtggttgaaaatatgtcagttgttgctttaatgttgaaacaatgttgaatgataaatggttgaaaaaagttacagaaatccttgtacaaatcaacgttgacatttttttatcatgatctgtatgttgaattaacgtcatggcttcacccaacattcaacatgtttggttaccatggtatTGGAGGACTCCGCGCACGCGGCCACGCGCAGCGCTTTACTTCACGtaattacgaacacctgacctgcagtgcagcagaattcagagacatgtaacttactccagagacgcactaacttgcacagcattgaatggaaaaggctttgtccatgtccagttgagggcatcaagaacacgcagatggcctaaacctgtgtcagcctggacagactgcCGTTCTGCTACTCCACACCAAGGCTTTTGTATAGATGTCTTGACTGctactgtgttctctaaaggttttctggaagctccatttgagggcatcaaggacatactgatggcctaaaccagtgtcagcctagacagacagacatctattgcagttctgctacacaagaccaaactctctgcttttgtatggatgtctgactagtacggtgttctctaaaggtgtaactggagcaaaacaacagcacccgttacagtgaaatttgtgttcataaaagatagTGATATATCAGGTGTAgtaacaggtccagtacatttgtcataaaggttaaatcacagtaagtactgtaaaaataacttgtttgcctttgccacaacaggtcatggtGTGTACTTACTGCTCGTAATAAACACACACGCTGATCTGATGCGGGAGAGATATATGCAAACACATtagtatttactgttttgttttgcctcactaaagtgttgttggagcttggtatgttcacagttgaaattactgaagtcacatggaacgttttgacaatgtgttttgtgccttattatgacaatgaccatcttgggaccattgctgtctgtagaggatgaggcatttaatctaaaatattttagtttgtgttctgaagattaacaagtctctgggatgacacaagtaattaataacagaacctatatgaacacttaatgtgacatgtaatagtgaaatagtggtcctacattcacaaatgtgagccattattataagacccatgtgaacatgcaatttttatgatactaataataataatggaataacaaattgcttttactgttgtgtttgatttactgaaatatttgtctacatgttccactgtcacaggtgctcagttttgctgcagtaatgctaaaca

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000133275

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020008 lncRNA upstream 458322 33254300 ~ 33293780 (+) False XLOC_010066
TCONS_00021728 lncRNA upstream 458322 33291419 ~ 33293780 (+) True XLOC_010066
TCONS_00020009 lncRNA upstream 463894 33255079 ~ 33288208 (+) False XLOC_010066
TCONS_00021727 lncRNA upstream 496849 33250490 ~ 33255253 (+) False XLOC_010066
TCONS_00021974 lncRNA upstream 537565 33180106 ~ 33214537 (+) True XLOC_010065
TCONS_00020020 lncRNA downstream 183611 33939990 ~ 33943728 (+) True XLOC_010073
TCONS_00020024 lncRNA downstream 235940 33992319 ~ 33993459 (+) False XLOC_010076
TCONS_00021976 lncRNA downstream 559383 34315762 ~ 34321379 (+) True XLOC_010080
TCONS_00021977 lncRNA downstream 563510 34319889 ~ 34323007 (+) True XLOC_010081
TCONS_00020032 lncRNA downstream 722618 34478997 ~ 34502203 (+) False XLOC_010082
TCONS_00020012 mRNA upstream 15271 33655890 ~ 33736831 (+) False XLOC_010069
TCONS_00020011 mRNA upstream 156117 33593116 ~ 33595985 (+) True XLOC_010068
TCONS_00020007 mRNA upstream 572983 33163858 ~ 33179119 (+) True XLOC_010064
TCONS_00020005 mRNA upstream 597584 33144112 ~ 33154518 (+) False XLOC_010063
TCONS_00020006 mRNA upstream 599524 33144306 ~ 33152578 (+) True XLOC_010063
TCONS_00020015 mRNA downstream 145627 33902006 ~ 33925877 (+) False XLOC_010071
TCONS_00020016 mRNA downstream 145683 33902062 ~ 33919790 (+) True XLOC_010071
TCONS_00020017 mRNA downstream 174485 33930864 ~ 33937924 (+) False XLOC_010072
TCONS_00020018 mRNA downstream 174653 33931032 ~ 33937363 (+) True XLOC_010072
TCONS_00020019 mRNA downstream 181848 33938227 ~ 33943728 (+) False XLOC_010073
TCONS_00020013 other upstream 18724 33719969 ~ 33733378 (+) True XLOC_010069
TCONS_00020010 other upstream 408837 33343151 ~ 33343265 (+) True XLOC_010067
TCONS_00019992 other upstream 1079166 32672820 ~ 32672936 (+) True XLOC_010055
TCONS_00019985 other upstream 1555335 32192197 ~ 32196767 (+) True XLOC_010050
TCONS_00019968 other upstream 1828178 31922787 ~ 31923924 (+) True XLOC_010039
TCONS_00020038 other downstream 968189 34724568 ~ 34724682 (+) True XLOC_010085
TCONS_00020039 other downstream 1450476 35206855 ~ 35280788 (+) True XLOC_010087
TCONS_00020045 other downstream 1645682 35402061 ~ 35405887 (+) True XLOC_010091
TCONS_00020056 other downstream 1969639 35726018 ~ 35726132 (+) True XLOC_010096
TCONS_00020068 other downstream 2826107 36582486 ~ 36584785 (+) False XLOC_010109

Expression Profile

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