RNA id: TCONS_00020015


Basic Information

Item Value
RNA id TCONS_00020015
length 2776
RNA type mRNA
GC content 0.46
exon number 16
gene id XLOC_010071
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 33902006 ~ 33925877 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGTGAGGGGGCAAACTCGTCGCGTGGTTGATGACGTATTTCCGGGTTCGTGTAGTTTATTGTAACACGTGGAAATCAACAACGGACTGCAACACtgcattatttcttttatttacagtaatacgAGGGCCCCGGATTAATCGTTCAAGATGGTTAAGGCAAAATTCAAGGGGAAAAGCTCCATAAACACCTCAAGCTCCAGTAGTAATCCCGACCGAGTCAAGGGAGCTGGAGGAAACAACATGAGGGACCGAGCAACTATAAAGCGCCTGAATATGTACAGACAAAAGCAGAGATGTAACAGTCGAGGTAAAGTCATCAAACCTTTGCAGTACCAGAACACAGTCGCTCCTGGAACTGTGGCCAGAGTTGAGCCCAACATCAAGTGGTTTGCCAACACAAAAGTCATCAAGCAGTCATCCTTGCAGAAGTTTCAGGAAGAAATGAACGCGGTGAAGAAAGATCCATACCGAGTGGTGATGAGACAGAGCAAACTACCAATGTCTTTGCTGCATGACCGGATAAAAGCACACAACTCCAAGGTGCATATTCTAGACACTGAGACGTTTGAGACAACATTTGGACCTAAGGCGCAGAGAAAGAGGCCAAACTTGTCTGTAGGAGAGCTGAAAGAGTTTGCTGAACAGGCTGAGGTCTCTGCACAGAGCTACAGTGCAGAGAAAGACCGCGATTTGGTGTCTGAGGACAGCGGAGTCAAGGAAGAGGCTCGTGAGGAGATCTTCAAGAAGGGGCAGTCAAAACGGATCTGGGGTGAGCTTTATAAGGTGATCGACTCTTCGGACGTAATTATCCAGGTGCTGGATGCTCGGGACCCAATGGGCACACGCTCACAAAGCATTGAGACTTACTTGAAGAAAGAGAAGCCTTGGAAACACCTCATATTTGTGCTCAATAAGTGTGACCTCATTCCCACATGGGTTACGAAACACTGGGTTGCAGTTCTTTCCCAGGAATACCCTACTTTGGCCTTTCACGCAAGCCTTACCAACTCCTTCGGCAAGGGCTCACTTATCCAGCTCCTGCGGCAGTTTGGCAAGCTCCATTCCGACAAAAAACAGATCAGTGTTGGTTTCATTGGTTACCCCAACGTTGGAAAGAGCTCTATTATCAATACCCTGCGCTCCAAAAAAGTCTGTAATGTGGCACCCCTTGCTGGTGAAACTAAGGTTTGGCAGTACATCACACTAATGAGACGGATTTTCCTCATCGACTGTCCTGGCGTTGTTTACCCGTCTGACGACAGCGAGACTGACATTGTGCTGAAGGGAGTGGTCCAAGTAGAGAAGATCCGAAATCCAGAGGATCACATTGGAGCAGTGCTGGAAAGAGCCAAAGCAGAGTACATCCAGAAGACATACCGCATTCCCTCCTGGAGCTCTGCCGAGGATTTCCTGGAAAAACTCGCCTTTCGCACCGGAAAACTGCTTAAGGGTGGAGAACCAGATCTGCCTACTGTGTCCAAAATGGTTCTGAATGATTGGCAGAGGGGACGCATCCCGTTTTTTGTCAAGCCCCCTGGCGTTGAGACAGACGAAGAGAACAAAGCCCAGGCGATGCTGGAAATGCCGGAGATGGAAAGCGAGATGGATGAGTTGGAAAACAGACTTGAAGCGCAGGATGTGGAAGAGGCCTCATCAAGCCAGCATGAAGAACAAAAGCTGCTGAAAAAGAAGAAGGAAGAGGTGCAGAAACTCTTCAATGATGTCAAGCAGAACTTTGGCAAAATTAACGTCGCCCCGGAGTTCAGCGAGGAAGACCTTGTGCCTGTGGAGATGCCGGACATGATGGATGCTTCCGGCTCAGAAGATGAGGaaaatgaggaggaggaggaggaggaggatgaggagaAAGCGGAAGAGGAGACTGGAGAACAGCAGGAAGAAGAATCCTCTGTTTCAGACTCAACACCCAAAGCAGGGAAAAAGAGCACACAGGAAGTGAACAAAGAGATGGATGAGAAGATTGCtaaattgaaacattttcttGATCGAGCCAAGTCAAAGCACTTCTCCGCCATACGCATTCCTAAAGGCCTTTCTGAAAGGGTGTTTACTGAAACAGTAGCAAAGCAGAACGCTGCAAAGAATCAACAACAGAAAGCTGTAAAACAAGGCAAACGGAGGAGAGCTGTAGAAGATGAGCCTGCACAGCCTGCAAAACTCACATCTAAAGAGAAAAGGAGAATTGAGCGTGCCCAGAAAGTGAAGAAAGTGGGAGTCCGCTATTATGAGACGCACAACGTCAAGAACAAGAATAAGAACAGAAAAATTCCCTCAGATGGCAAGAAAGCCAATCGAGCCAAGCGATAAGAGCACATCATTAGATACCCAGTCCCATCCATCCCGTTTTCCAGAGTCCCGTTGGCGGCTGATTCGGAAGATCTGGAGTCAAATCACAGTGATTTGTGTAAAGGTGCAGGTTTGGCAGATCTGTGATGCACTTTAATCATACTGTGATGCTAACCATCATCCTAAACATTACGACTGCACTCTGACAGCTAATTCTCTTCAGCATTGTGCATTTTCAAAAGCTTTTAACTTAAGTCAACGTCCAGATTCAGCAATGTTGAAATGTGAATCATGTACTTAGTGCCATTATTGTCTGGTGAAAAAGCAACACATTCTCAGAGCGTATAAATCTTTTATTTGTTGAATTTGTTTGAGTTGGAGTATTATTGTTCTAATAATATTTAGGATTTATTCTTCAGGGTGATTATGCTCTCCAGTTGTgcctaaataaacaaatgaaagcgTAA

Function

GO:

id name namespace
GO:0003407 neural retina development biological_process
GO:0000448 cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0007096 regulation of exit from mitosis biological_process
GO:0045664 regulation of neuron differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-040426-2317 Predicted to enable GTP binding activity. Acts upstream of or within several processes, including cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); neural retina development; and regulation of exit from mitosis. Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in several structures, including head; immature eye; midbrain; neural plate; and segmental plate. Orthologous to human GNL2 (G protein nucleolar 2).

Ensembl:

ensembl_id ENSDART00000161807

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021975 lncRNA upstream 145627 33752361 ~ 33756379 (+) True XLOC_010070
TCONS_00020008 lncRNA upstream 608226 33254300 ~ 33293780 (+) False XLOC_010066
TCONS_00021728 lncRNA upstream 608226 33291419 ~ 33293780 (+) True XLOC_010066
TCONS_00020009 lncRNA upstream 613798 33255079 ~ 33288208 (+) False XLOC_010066
TCONS_00021727 lncRNA upstream 646753 33250490 ~ 33255253 (+) False XLOC_010066
TCONS_00020020 lncRNA downstream 14113 33939990 ~ 33943728 (+) True XLOC_010073
TCONS_00020024 lncRNA downstream 66442 33992319 ~ 33993459 (+) False XLOC_010076
TCONS_00021976 lncRNA downstream 389885 34315762 ~ 34321379 (+) True XLOC_010080
TCONS_00021977 lncRNA downstream 394012 34319889 ~ 34323007 (+) True XLOC_010081
TCONS_00020032 lncRNA downstream 553120 34478997 ~ 34502203 (+) False XLOC_010082
TCONS_00020012 mRNA upstream 165175 33655890 ~ 33736831 (+) False XLOC_010069
TCONS_00020011 mRNA upstream 306021 33593116 ~ 33595985 (+) True XLOC_010068
TCONS_00020007 mRNA upstream 722887 33163858 ~ 33179119 (+) True XLOC_010064
TCONS_00020005 mRNA upstream 747488 33144112 ~ 33154518 (+) False XLOC_010063
TCONS_00020006 mRNA upstream 749428 33144306 ~ 33152578 (+) True XLOC_010063
TCONS_00020017 mRNA downstream 4987 33930864 ~ 33937924 (+) False XLOC_010072
TCONS_00020018 mRNA downstream 5155 33931032 ~ 33937363 (+) True XLOC_010072
TCONS_00020019 mRNA downstream 12350 33938227 ~ 33943728 (+) False XLOC_010073
TCONS_00020021 mRNA downstream 27767 33953644 ~ 33985497 (+) False XLOC_010074
TCONS_00020022 mRNA downstream 27767 33953644 ~ 33986796 (+) True XLOC_010074
TCONS_00020014 other upstream 145627 33752102 ~ 33756379 (+) False XLOC_010070
TCONS_00020013 other upstream 168628 33719969 ~ 33733378 (+) True XLOC_010069
TCONS_00020010 other upstream 558741 33343151 ~ 33343265 (+) True XLOC_010067
TCONS_00019992 other upstream 1229070 32672820 ~ 32672936 (+) True XLOC_010055
TCONS_00019985 other upstream 1705239 32192197 ~ 32196767 (+) True XLOC_010050
TCONS_00020038 other downstream 798691 34724568 ~ 34724682 (+) True XLOC_010085
TCONS_00020039 other downstream 1280978 35206855 ~ 35280788 (+) True XLOC_010087
TCONS_00020045 other downstream 1476184 35402061 ~ 35405887 (+) True XLOC_010091
TCONS_00020056 other downstream 1800141 35726018 ~ 35726132 (+) True XLOC_010096
TCONS_00020068 other downstream 2656609 36582486 ~ 36584785 (+) False XLOC_010109

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_10526694_10541815.mRNA True 2313 mRNA 0.48 16 CI01000027 10526694 ~ 10542130 (+)