RNA id: TCONS_00020019


Basic Information

Item Value
RNA id TCONS_00020019
length 1192
RNA type mRNA
GC content 0.44
exon number 6
gene id XLOC_010073
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 33938227 ~ 33943728 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCATCACAATTCAAGCGTCATGTTGTCGTGAGTAAGGTAGTTCGCTGACTTTAAAGATGTAGCCTAGTTTGCTTCTTCACATAGAGGTGAACTTGTCTTCATCATGATGTCATCGGATCCTCCATCTCTGCGCTTCGGCCAGGTTGTGATTGGTCCGCCTGGTTCAGGTAAAACCACTTATTGTCGGGGCATGCAGGAGTTTCTGAGTCGCCTCGGGCGAAAGGTGGTCATTGTAAACCTCGATCCTGCCAACGAAGGCTTGCCTTATCCGTGTGCCGTGGACATAGCAGAGCTTGTAACTCTGGATGATGTGATGGACGGTCTAAAACTCGGCCCCAATGGTGGTCTCATCTACTCTATGGAATATTTGGAGGCAAATTTGGACTGGTTGGAGAACAAGCTGAAGCTGCATCATGACTGCTACTTTCTGTTTGACTGCCCAGGCCAAGTGGAACTGTACACTCATCACAATTCAGTGAAGAATATCTTTGCACAGCTGTCCAAGTGGAATTTCAGGCTGACTGCAGTGCATCTGGTGGATTCACATTACTGTGCTGATCCAGCTAAGTTCATCTCTGTGCTGTGCACATCTCTGTCCACCATGCTGCATGTTGAATTGCCACATGTAAATGTGCTGTCAAAAATGGACCTCATTGAGCAGTATGGAAAACTTGCCTTCAACCTGGACTTCTACACTGAGGTTCTGGATCTGTCATATCTGGTGGAGCATCTGTCTGCAGACCCTTTCTTCAAGAAATTTCACCACCTCAATGTGAAGTTGGCTGAAGTGATCCAGGACTACAGCTTGGTGTCTTTTGTACCTCTGAATGTGCAAgacaaggAAAGCATGATGCAAGTTCTGAGAACTGTGGACAAAGCCAATGGTTATTGCTTTGGAGATCTGGAGGAGAGGAACCTGCAAGCCATGATGTCTGCTGCTGTTGGAGCCGACTTCCAGTTCAGCACAACTCTTGGTGTACAGGAGAAATATCTGGATGCTACTAAGAACCATGTGGAGGATGAAGTTATGGACTTGTAGAACTTTTGGTatgaattaaaaaaggaaaaattagaaaaacacattttttaaatgtcttattgtTTTACACATTGAAAATATTACTGATAAAAATATAAGCAACAGAGTGAATTGATGTTTCCATTTctgaaaattaaaatgtttacattcacA

Function

GO:

id name namespace
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-86 Predicted to enable GTPase activity. Orthologous to human GPN2 (GPN-loop GTPase 2).

Ensembl:

ensembl_id ENSDART00000166254

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021975 lncRNA upstream 181848 33752361 ~ 33756379 (+) True XLOC_010070
TCONS_00020008 lncRNA upstream 644447 33254300 ~ 33293780 (+) False XLOC_010066
TCONS_00021728 lncRNA upstream 644447 33291419 ~ 33293780 (+) True XLOC_010066
TCONS_00020009 lncRNA upstream 650019 33255079 ~ 33288208 (+) False XLOC_010066
TCONS_00021727 lncRNA upstream 682974 33250490 ~ 33255253 (+) False XLOC_010066
TCONS_00020024 lncRNA downstream 48591 33992319 ~ 33993459 (+) False XLOC_010076
TCONS_00021976 lncRNA downstream 372034 34315762 ~ 34321379 (+) True XLOC_010080
TCONS_00021977 lncRNA downstream 376161 34319889 ~ 34323007 (+) True XLOC_010081
TCONS_00020032 lncRNA downstream 535269 34478997 ~ 34502203 (+) False XLOC_010082
TCONS_00020033 lncRNA downstream 550259 34493987 ~ 34502203 (+) False XLOC_010082
TCONS_00020017 mRNA upstream 303 33930864 ~ 33937924 (+) False XLOC_010072
TCONS_00020018 mRNA upstream 864 33931032 ~ 33937363 (+) True XLOC_010072
TCONS_00020015 mRNA upstream 12350 33902006 ~ 33925877 (+) False XLOC_010071
TCONS_00020016 mRNA upstream 18437 33902062 ~ 33919790 (+) True XLOC_010071
TCONS_00020012 mRNA upstream 201396 33655890 ~ 33736831 (+) False XLOC_010069
TCONS_00020021 mRNA downstream 9916 33953644 ~ 33985497 (+) False XLOC_010074
TCONS_00020022 mRNA downstream 9916 33953644 ~ 33986796 (+) True XLOC_010074
TCONS_00020023 mRNA downstream 44164 33987892 ~ 33990724 (+) True XLOC_010075
TCONS_00020025 mRNA downstream 48690 33992418 ~ 34006335 (+) False XLOC_010076
TCONS_00020026 mRNA downstream 48778 33992506 ~ 34006332 (+) True XLOC_010076
TCONS_00020014 other upstream 181848 33752102 ~ 33756379 (+) False XLOC_010070
TCONS_00020013 other upstream 204849 33719969 ~ 33733378 (+) True XLOC_010069
TCONS_00020010 other upstream 594962 33343151 ~ 33343265 (+) True XLOC_010067
TCONS_00019992 other upstream 1265291 32672820 ~ 32672936 (+) True XLOC_010055
TCONS_00019985 other upstream 1741460 32192197 ~ 32196767 (+) True XLOC_010050
TCONS_00020038 other downstream 780840 34724568 ~ 34724682 (+) True XLOC_010085
TCONS_00020039 other downstream 1263127 35206855 ~ 35280788 (+) True XLOC_010087
TCONS_00020045 other downstream 1458333 35402061 ~ 35405887 (+) True XLOC_010091
TCONS_00020056 other downstream 1782290 35726018 ~ 35726132 (+) True XLOC_010096
TCONS_00020068 other downstream 2638758 36582486 ~ 36584785 (+) False XLOC_010109

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_10548922_10551337.mRNA True 1275 mRNA 0.40 5 CI01000027 10548922 ~ 10551652 (+)