Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00020024 |
| length | 1047 |
| lncRNA type | retained_intron |
| GC content | 0.43 |
| exon number | 2 |
| gene id | XLOC_010076 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 33992319 ~ 34006335 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006612 | protein targeting to membrane | biological_process |
| GO:0009057 | macromolecule catabolic process | biological_process |
| GO:0030237 | female sex determination | biological_process |
| GO:0018230 | peptidyl-L-cysteine S-palmitoylation | biological_process |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0005794 | Golgi apparatus | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0016409 | palmitoyltransferase activity | molecular_function |
| GO:0016740 | transferase activity | molecular_function |
| GO:0016746 | transferase activity, transferring acyl groups | molecular_function |
| GO:0019706 | protein-cysteine S-palmitoyltransferase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-060929-424 | Predicted to enable protein-cysteine S-palmitoyltransferase activity. Predicted to be involved in peptidyl-L-cysteine S-palmitoylation and protein targeting to membrane. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human ZDHHC18 (zinc finger DHHC-type palmitoyltransferase 18). |
| ensembl_id | ENSDART00000134946 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00020020 | lncRNA | upstream | 48591 | 33939990 ~ 33943728 (+) | True | XLOC_010073 |
| TCONS_00021975 | lncRNA | upstream | 235940 | 33752361 ~ 33756379 (+) | True | XLOC_010070 |
| TCONS_00020008 | lncRNA | upstream | 698539 | 33254300 ~ 33293780 (+) | False | XLOC_010066 |
| TCONS_00021728 | lncRNA | upstream | 698539 | 33291419 ~ 33293780 (+) | True | XLOC_010066 |
| TCONS_00020009 | lncRNA | upstream | 704111 | 33255079 ~ 33288208 (+) | False | XLOC_010066 |
| TCONS_00021976 | lncRNA | downstream | 322303 | 34315762 ~ 34321379 (+) | True | XLOC_010080 |
| TCONS_00021977 | lncRNA | downstream | 326430 | 34319889 ~ 34323007 (+) | True | XLOC_010081 |
| TCONS_00020032 | lncRNA | downstream | 485538 | 34478997 ~ 34502203 (+) | False | XLOC_010082 |
| TCONS_00020033 | lncRNA | downstream | 500528 | 34493987 ~ 34502203 (+) | False | XLOC_010082 |
| TCONS_00021978 | lncRNA | downstream | 503641 | 34497100 ~ 34502203 (+) | True | XLOC_010082 |
| TCONS_00020023 | mRNA | upstream | 1595 | 33987892 ~ 33990724 (+) | True | XLOC_010075 |
| TCONS_00020022 | mRNA | upstream | 5523 | 33953644 ~ 33986796 (+) | True | XLOC_010074 |
| TCONS_00020021 | mRNA | upstream | 6822 | 33953644 ~ 33985497 (+) | False | XLOC_010074 |
| TCONS_00020019 | mRNA | upstream | 48591 | 33938227 ~ 33943728 (+) | False | XLOC_010073 |
| TCONS_00020017 | mRNA | upstream | 54395 | 33930864 ~ 33937924 (+) | False | XLOC_010072 |
| TCONS_00020027 | mRNA | downstream | 53274 | 34046733 ~ 34056443 (+) | True | XLOC_010077 |
| TCONS_00020028 | mRNA | downstream | 118460 | 34111919 ~ 34131971 (+) | False | XLOC_010078 |
| TCONS_00020029 | mRNA | downstream | 118470 | 34111929 ~ 34135244 (+) | False | XLOC_010078 |
| TCONS_00020030 | mRNA | downstream | 118504 | 34111963 ~ 34118010 (+) | True | XLOC_010078 |
| TCONS_00020031 | mRNA | downstream | 167376 | 34160835 ~ 34174260 (+) | True | XLOC_010079 |
| TCONS_00020014 | other | upstream | 235940 | 33752102 ~ 33756379 (+) | False | XLOC_010070 |
| TCONS_00020013 | other | upstream | 258941 | 33719969 ~ 33733378 (+) | True | XLOC_010069 |
| TCONS_00020010 | other | upstream | 649054 | 33343151 ~ 33343265 (+) | True | XLOC_010067 |
| TCONS_00019992 | other | upstream | 1319383 | 32672820 ~ 32672936 (+) | True | XLOC_010055 |
| TCONS_00019985 | other | upstream | 1795552 | 32192197 ~ 32196767 (+) | True | XLOC_010050 |
| TCONS_00020038 | other | downstream | 731109 | 34724568 ~ 34724682 (+) | True | XLOC_010085 |
| TCONS_00020039 | other | downstream | 1213396 | 35206855 ~ 35280788 (+) | True | XLOC_010087 |
| TCONS_00020045 | other | downstream | 1408602 | 35402061 ~ 35405887 (+) | True | XLOC_010091 |
| TCONS_00020056 | other | downstream | 1732559 | 35726018 ~ 35726132 (+) | True | XLOC_010096 |
| TCONS_00020068 | other | downstream | 2589027 | 36582486 ~ 36584785 (+) | False | XLOC_010109 |
