RNA id: TCONS_00020026


Basic Information

Item Value
RNA id TCONS_00020026
length 3351
RNA type mRNA
GC content 0.43
exon number 9
gene id XLOC_010076
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 33992319 ~ 34006335 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACCCACAGATTAAACTCGGACGGGGAGCAGCGCGAGGAGCCGACTGTCGTTCAGATGACGGTTGAGCAGCGCGTGAGGAGTAATGTCCTCCGCTGAGATAGTTGACAGCTAACGTTAGTCAACAAGCTAACACGATTAGCTTAGCCTAGAAGCTCCTAATTTATCGAAATCAACAACATGGCATGACAGTATAACAATTACACGTTAATATGTTACCAATAAGGGTTATTTAGCTGCATACTTTTCCACAGAGCAACATATTATTTGTTTACGTCCGTTCTAATTAGCTTAACGTAGTTCTAGCTTTGTTTACATATTCATTTTTACCACCCAAGTGATTTATTGGTGTTACAGAAGCTTCACGGCTGATAACTAACGTTAATGAGTGTCGTGGTAGCTTCCCCTTTTGACTGGGCTTGGCTTGTAACAAGTTAactaaactcattcttgaggtttCGACTGTACTCCGCTGTAACCTtagttaaaaaatgaaaaactgtgaGTATCAACAAATAGACCCTCGAGCTTTAAGAACACCCAGCAGCCGGACCTCCAGCACCCTGCCCTGCGGGAGAAAGGGCTCCCAGCGCCTGAGGAGGAAATGGGAGGTTTTCCCTGGGAAAAATCGCTTCTACTGTGACGGACGTATTATGTTGGCCAGGCAATGCGGAGTCCTCCCGCTGACCATCGGCCTTATTTTCATCACCAGTGTCTTATTCTTCACATTTGACTGCCCTTTTCTGGTGGATCACCTCACTGTCTTCATTCCAGTTATTGGCGGAGTGTTATTTATATTCGTCGTCATTAGTCTTCTTCAAACCAGTTTTACAGACCCAGGGATTTTACCCAGGGCTTTGCCAGATGAGGCTGCAGACATTGAGAAACAGATTGATAATTCTGGATCTTCGACATACCGTCCACCTCCCCGCACTAAAGAGATTCTCATAAATGATCAGGTGGTTAAGCTTAAATACTGTTTCACATGCAAGATGTTCCGTCCACCCCGGACGTCCCACTGCAGCCTCTGTGACAACTGTGTCGAGCGCTTCGATCATCACTGTCCTTGGGTGGGAAACTGTGTGGGGAAGCGCAACTATCGCTTTTTTTATGCCTTCATAGTGTCGCTGTCGTTTCTGACTTCCTTTATCTTTGGCTGTGTGATCACTCACCTCACTTTGCGATCACAAGGTGGGAATGGTTTCATCCAGGCAATACAGGACAGCCCCGCCAGTGTTGTCGAGCTGGTCATTTGCTTCTTCTCCATCTGGTCCATTCTGGGTCTGTCGGGTTTCCATACTTATCTTGTGGCATCCAACCTTACAACCAACGAAGATATCAAAGGATCTTGGTCCAGTAAAAGAGGAGAAGAATCAGGAAATCCATATACCTATAACAATATCTTCACAAACTGCTGTGTGGTGCTTTGCGGGCCGATGCCACCCAGCTTGATTGACAGAAGAGGCTTTGTACCTCCAGAGGACGCACCTCAAACTGTGACCTCTGACGCTGAGCTCCCTGCTTTCATGGCCAAAAATGACACAAACATGTGCGCACAGGGCACAAAGGAGCTTTTAGAATCGATGGCAAACTCCACAGTGATCCAGAGCACCTGTGCTCCCGGCAAACCCAAAACCGCCCCGGTTACCCAAGAGAGTCTACTAAATACTGTCTCCATAACTGTCTCTCCTCCCAGCAAACCTCCTTCCAACGGCTGCTCGGGCCGCCAGGCTCGACGGCCCATAGATGTGCCCTGCTCCCAGAGAGGGCTCAAACGTGCAGCTCTTCACACCCATAAACCCATGCTGCGTCTGCCCAGTCCTCTCTACTCCCTCAGTGACAGTCCACTCATTCTTAGTGACGCTCCTGACATGGGCTTCATCCCACTGAACTGAGCGCAGTATCTCTGCCACCAGCAATCTTGTGCAAATACTCTTCACTCTGTTACCAGAACAgcatcacacttttttttttttatttttacttttttttttttgacgtttGACGTTCTAAGCTCAGGATCCTCTCAGGAAACATGCCATCTTTCAACAAAagagaataaacctgcattgttttttttcagttCCGTTATCATACATTTGATGGAGAGAATTGCAAAGCTTCTTGAGAAGATGCTTTTGGTTTTCAATCCAATCTTGCACAAAAAATCAGCAGATGATCAGTGTTTTTTCATGGAACTTTGAGCCATTTCTCCAGCCTTTTGTCACCCCCTTAGACCTAATGCAATAATTCTACGCTTTCAAAGGTCATTTGGGTCTAAACAAGCCTTACTTTGGAGATGCTTCTATTCATTTTGAGTGGTGTTAAAGGCCTGCTACAATAAAGTCATTGGCTAAAAAGTATTCGCACCAACAGCCAAGTAGATGCACGGCAGTTACGGATTGGAGAGCTCGGGCTTAGTGTTATTGAGTTTTCCATGTTTGTGATGCGCTGTTACTGTTGGTCCAGGAGTTGTTTTCTCCTGTATAACGTTGTGGTTTCCAGTGAATTCACAGAtttcttatttttgtttgttttgtgtccTTTTACTACCGGGTTTTTccttctttaaatgtttttttggacACCCAAGTGAAATTTTACAGTGATGATATTTTCCCCTTTAAGATAATTAATCTAGTTTCTTGTAATTAGATGGAAAGTGATAAATCACACAGCACAAAAACATCTCGAAGAACTGTTAGCCGTAAGTCATAATCAGTAATCTTGTgcaaatgtggaagtgcgctttTTAGAAAATTTATACATTTCAGTAGCAccttaaagtttttttatttttttttatttttacatttaaaatgttttaacatttaagtCATGCGTTAgatagatcagtgtttctcaaccacgctccTGTAGGACCACCAGTTCTGCTCATTTTCCACGTCTCCTTCCCCAAACGCACCTGTagtcagatcatcagctcattagcagagactaaaagacctgtaatgggtgggACAGAGAAAGGAggcatctaaaacatgcagtggtggtggtcctccagaaacatggttgagaaacactgcgaAAGGTAATGATGATGTTCAGCTTTTTTAATAAGCCCTTTAACCTAGTTTTAAAGAGTTACCCAGTGTTAAATTGATAAAATGTAATATCTGAGTATGActacaaatataatacatatggATAATAATGAGATTTTTAGATCATAAAATTTGTATACATCTTTGTAAGATAATTCTccgaaaatcatttttaatcttGGAAAAACCCTGGTGCATTTCTGACTTTTCATTGGTGGGTCAACAATTGCTTTTGAATTGTTTTTAGTGTTTTAACTAAGCTTCAGTAAAGAACTGTTGTAACTT

Function

GO:

id name namespace
GO:0006612 protein targeting to membrane biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:0030237 female sex determination biological_process
GO:0018230 peptidyl-L-cysteine S-palmitoylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016409 palmitoyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0019706 protein-cysteine S-palmitoyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-424 Predicted to enable protein-cysteine S-palmitoyltransferase activity. Predicted to be involved in peptidyl-L-cysteine S-palmitoylation and protein targeting to membrane. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human ZDHHC18 (zinc finger DHHC-type palmitoyltransferase 18).

Ensembl:

ensembl_id ENSDART00000130540

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020020 lncRNA upstream 48778 33939990 ~ 33943728 (+) True XLOC_010073
TCONS_00021975 lncRNA upstream 236127 33752361 ~ 33756379 (+) True XLOC_010070
TCONS_00020008 lncRNA upstream 698726 33254300 ~ 33293780 (+) False XLOC_010066
TCONS_00021976 lncRNA downstream 309430 34315762 ~ 34321379 (+) True XLOC_010080
TCONS_00021977 lncRNA downstream 313557 34319889 ~ 34323007 (+) True XLOC_010081
TCONS_00020032 lncRNA downstream 472665 34478997 ~ 34502203 (+) False XLOC_010082
TCONS_00020033 lncRNA downstream 487655 34493987 ~ 34502203 (+) False XLOC_010082
TCONS_00021978 lncRNA downstream 490768 34497100 ~ 34502203 (+) True XLOC_010082
TCONS_00020023 mRNA upstream 1782 33987892 ~ 33990724 (+) True XLOC_010075
TCONS_00020022 mRNA upstream 5710 33953644 ~ 33986796 (+) True XLOC_010074
TCONS_00020021 mRNA upstream 7009 33953644 ~ 33985497 (+) False XLOC_010074
TCONS_00020019 mRNA upstream 48778 33938227 ~ 33943728 (+) False XLOC_010073
TCONS_00020018 mRNA upstream 55143 33931032 ~ 33937363 (+) True XLOC_010072
TCONS_00020027 mRNA downstream 40401 34046733 ~ 34056443 (+) True XLOC_010077
TCONS_00020028 mRNA downstream 105587 34111919 ~ 34131971 (+) False XLOC_010078
TCONS_00020029 mRNA downstream 105597 34111929 ~ 34135244 (+) False XLOC_010078
TCONS_00020030 mRNA downstream 105631 34111963 ~ 34118010 (+) True XLOC_010078
TCONS_00020031 mRNA downstream 154503 34160835 ~ 34174260 (+) True XLOC_010079
TCONS_00020014 other upstream 236127 33752102 ~ 33756379 (+) False XLOC_010070
TCONS_00020013 other upstream 259128 33719969 ~ 33733378 (+) True XLOC_010069
TCONS_00020010 other upstream 649241 33343151 ~ 33343265 (+) True XLOC_010067
TCONS_00019992 other upstream 1319570 32672820 ~ 32672936 (+) True XLOC_010055
TCONS_00019985 other upstream 1795739 32192197 ~ 32196767 (+) True XLOC_010050
TCONS_00020038 other downstream 718236 34724568 ~ 34724682 (+) True XLOC_010085
TCONS_00020039 other downstream 1200523 35206855 ~ 35280788 (+) True XLOC_010087
TCONS_00020045 other downstream 1395729 35402061 ~ 35405887 (+) True XLOC_010091
TCONS_00020056 other downstream 1719686 35726018 ~ 35726132 (+) True XLOC_010096
TCONS_00020068 other downstream 2576154 36582486 ~ 36584785 (+) False XLOC_010109

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU256872 True 823 TUCP 0.61 7 NC_053129.1 34482864 ~ 34503755 (+)