Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00020028 |
| length | 1055 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 10 |
| gene id | XLOC_010078 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 34111919 ~ 34135244 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006351 | transcription, DNA-templated | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0006412 | translation | biological_process |
| GO:0006414 | translational elongation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0003746 | translation elongation factor activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-1860 | Predicted to enable translation elongation factor activity and zinc ion binding activity. Predicted to act upstream of or within regulation of transcription, DNA-templated; transcription, DNA-templated; and translational elongation. Predicted to be located in nucleus. Is expressed in adaxial cell; musculature system; neuromast; and somite. Orthologous to human TCEA3 (transcription elongation factor A3). |
| ensembl_id | ENSDART00000134037 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00020024 | lncRNA | upstream | 118460 | 33992319 ~ 33993459 (+) | False | XLOC_010076 |
| TCONS_00020020 | lncRNA | upstream | 168191 | 33939990 ~ 33943728 (+) | True | XLOC_010073 |
| TCONS_00021975 | lncRNA | upstream | 355540 | 33752361 ~ 33756379 (+) | True | XLOC_010070 |
| TCONS_00021728 | lncRNA | upstream | 818139 | 33291419 ~ 33293780 (+) | True | XLOC_010066 |
| TCONS_00020009 | lncRNA | upstream | 823711 | 33255079 ~ 33288208 (+) | False | XLOC_010066 |
| TCONS_00021976 | lncRNA | downstream | 183791 | 34315762 ~ 34321379 (+) | True | XLOC_010080 |
| TCONS_00021977 | lncRNA | downstream | 187918 | 34319889 ~ 34323007 (+) | True | XLOC_010081 |
| TCONS_00020032 | lncRNA | downstream | 347026 | 34478997 ~ 34502203 (+) | False | XLOC_010082 |
| TCONS_00020033 | lncRNA | downstream | 362016 | 34493987 ~ 34502203 (+) | False | XLOC_010082 |
| TCONS_00021978 | lncRNA | downstream | 365129 | 34497100 ~ 34502203 (+) | True | XLOC_010082 |
| TCONS_00020027 | mRNA | upstream | 55476 | 34046733 ~ 34056443 (+) | True | XLOC_010077 |
| TCONS_00020025 | mRNA | upstream | 105584 | 33992418 ~ 34006335 (+) | False | XLOC_010076 |
| TCONS_00020026 | mRNA | upstream | 105587 | 33992506 ~ 34006332 (+) | True | XLOC_010076 |
| TCONS_00020023 | mRNA | upstream | 121195 | 33987892 ~ 33990724 (+) | True | XLOC_010075 |
| TCONS_00020022 | mRNA | upstream | 125123 | 33953644 ~ 33986796 (+) | True | XLOC_010074 |
| TCONS_00020031 | mRNA | downstream | 28864 | 34160835 ~ 34174260 (+) | True | XLOC_010079 |
| TCONS_00020034 | mRNA | downstream | 391006 | 34522977 ~ 34532805 (+) | False | XLOC_010083 |
| TCONS_00020035 | mRNA | downstream | 391544 | 34523515 ~ 34527206 (+) | True | XLOC_010084 |
| TCONS_00020036 | mRNA | downstream | 396438 | 34528409 ~ 34531851 (+) | False | XLOC_010083 |
| TCONS_00020037 | mRNA | downstream | 399515 | 34531486 ~ 34532888 (+) | True | XLOC_010083 |
| TCONS_00020014 | other | upstream | 355540 | 33752102 ~ 33756379 (+) | False | XLOC_010070 |
| TCONS_00020013 | other | upstream | 378541 | 33719969 ~ 33733378 (+) | True | XLOC_010069 |
| TCONS_00020010 | other | upstream | 768654 | 33343151 ~ 33343265 (+) | True | XLOC_010067 |
| TCONS_00019992 | other | upstream | 1438983 | 32672820 ~ 32672936 (+) | True | XLOC_010055 |
| TCONS_00019985 | other | upstream | 1915152 | 32192197 ~ 32196767 (+) | True | XLOC_010050 |
| TCONS_00020038 | other | downstream | 592597 | 34724568 ~ 34724682 (+) | True | XLOC_010085 |
| TCONS_00020039 | other | downstream | 1074884 | 35206855 ~ 35280788 (+) | True | XLOC_010087 |
| TCONS_00020045 | other | downstream | 1270090 | 35402061 ~ 35405887 (+) | True | XLOC_010091 |
| TCONS_00020056 | other | downstream | 1594047 | 35726018 ~ 35726132 (+) | True | XLOC_010096 |
| TCONS_00020068 | other | downstream | 2450515 | 36582486 ~ 36584785 (+) | False | XLOC_010109 |
