RNA id: TCONS_00020030


Basic Information

Item Value
RNA id TCONS_00020030
length 697
RNA type mRNA
GC content 0.42
exon number 6
gene id XLOC_010078
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 34111919 ~ 34135244 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAACTTCAAACATTTCGCTGAATTATAAAGATTTATGTGACTTGACGTACTATACACACTTGATTTTCACTTACAGCATATTAATGCGCACACAATGACGCGAGAGGAGGACCTGTTGCGGATTGCCAAAAAACTAGACAAGATGGTGTCTAGAAATAACATGGATGGAGCTCTAGATCTTCTGAGAGAATTGAAAGATTTCAACATGACACTGAAACTTCTTCAGGATACAAGAATCGGCATGTCCGTCAATGGAATAAGAAAACATTGCACAGACGAGGATGTTGTCAACTTGGCAAAGATTCTGATCAAAAACTGGAAGAGGCTTTTAGAATCAGCTCAGAACCCAAAATCTGAGAGGCCAAATGAGGTGAAGAACGGCAGTCATCCAAGCAAGCCATCGGGATCACCCAGCAGGACTTCTCCTGAGAAAGACTCCAGTCTGCGAAGATCGACGGCGGAAATTAAACCAGACTTAGATTCTAACAAGAAACTTGATGAAAAACAAAGGAGAGAGAAAATCGACGCAGAGTTCAGGAAGGAAAAACGAGAAAGTAACCAGAAAAAAGAGAAACAGTCAATTAACAATAAAAAGGATCAAGAGAGGAAAGATGCACTGAACAGTGATCATCTTCCCTCCCCGTTGACGCTTTCGTCTGTTCCACTTAAGTGTCCTCCGACTGGGGAGGTGAAATGG

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006412 translation biological_process
GO:0006414 translational elongation biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1860 Predicted to enable translation elongation factor activity and zinc ion binding activity. Predicted to act upstream of or within regulation of transcription, DNA-templated; transcription, DNA-templated; and translational elongation. Predicted to be located in nucleus. Is expressed in adaxial cell; musculature system; neuromast; and somite. Orthologous to human TCEA3 (transcription elongation factor A3).

Ensembl:

ensembl_id ENSDART00000140552

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020024 lncRNA upstream 118504 33992319 ~ 33993459 (+) False XLOC_010076
TCONS_00020020 lncRNA upstream 168235 33939990 ~ 33943728 (+) True XLOC_010073
TCONS_00021975 lncRNA upstream 355584 33752361 ~ 33756379 (+) True XLOC_010070
TCONS_00021728 lncRNA upstream 818183 33291419 ~ 33293780 (+) True XLOC_010066
TCONS_00020009 lncRNA upstream 823755 33255079 ~ 33288208 (+) False XLOC_010066
TCONS_00021976 lncRNA downstream 197752 34315762 ~ 34321379 (+) True XLOC_010080
TCONS_00021977 lncRNA downstream 201879 34319889 ~ 34323007 (+) True XLOC_010081
TCONS_00020032 lncRNA downstream 360987 34478997 ~ 34502203 (+) False XLOC_010082
TCONS_00020033 lncRNA downstream 375977 34493987 ~ 34502203 (+) False XLOC_010082
TCONS_00021978 lncRNA downstream 379090 34497100 ~ 34502203 (+) True XLOC_010082
TCONS_00020027 mRNA upstream 55520 34046733 ~ 34056443 (+) True XLOC_010077
TCONS_00020025 mRNA upstream 105628 33992418 ~ 34006335 (+) False XLOC_010076
TCONS_00020026 mRNA upstream 105631 33992506 ~ 34006332 (+) True XLOC_010076
TCONS_00020023 mRNA upstream 121239 33987892 ~ 33990724 (+) True XLOC_010075
TCONS_00020022 mRNA upstream 125167 33953644 ~ 33986796 (+) True XLOC_010074
TCONS_00020031 mRNA downstream 42825 34160835 ~ 34174260 (+) True XLOC_010079
TCONS_00020034 mRNA downstream 404967 34522977 ~ 34532805 (+) False XLOC_010083
TCONS_00020035 mRNA downstream 405505 34523515 ~ 34527206 (+) True XLOC_010084
TCONS_00020036 mRNA downstream 410399 34528409 ~ 34531851 (+) False XLOC_010083
TCONS_00020037 mRNA downstream 413476 34531486 ~ 34532888 (+) True XLOC_010083
TCONS_00020014 other upstream 355584 33752102 ~ 33756379 (+) False XLOC_010070
TCONS_00020013 other upstream 378585 33719969 ~ 33733378 (+) True XLOC_010069
TCONS_00020010 other upstream 768698 33343151 ~ 33343265 (+) True XLOC_010067
TCONS_00019992 other upstream 1439027 32672820 ~ 32672936 (+) True XLOC_010055
TCONS_00019985 other upstream 1915196 32192197 ~ 32196767 (+) True XLOC_010050
TCONS_00020038 other downstream 606558 34724568 ~ 34724682 (+) True XLOC_010085
TCONS_00020039 other downstream 1088845 35206855 ~ 35280788 (+) True XLOC_010087
TCONS_00020045 other downstream 1284051 35402061 ~ 35405887 (+) True XLOC_010091
TCONS_00020056 other downstream 1608008 35726018 ~ 35726132 (+) True XLOC_010096
TCONS_00020068 other downstream 2464476 36582486 ~ 36584785 (+) False XLOC_010109

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_10641759_10654240.mRNA True 1946 mRNA 0.44 16 CI01000027 10641448 ~ 10654240 (+)