RNA id: TCONS_00021977


Basic Information

Item Value
RNA id TCONS_00021977
length 734
lncRNA type antisense_over
GC content 0.54
exon number 2
gene id XLOC_010081
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 34319889 ~ 34323007 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cctctaaagCATTTCACCATTGTGCACAGAGGTTTTTAAGTGCTATCTGGATCAGCGTCAGATCCTTCTGCAGAAGAGCCACGTCCCCTGAGTGGCGCCGCTACAGGCTTTTCTGTCCCACGTAGCAGTCTGCTTTCACCTGAGGAACTCGCTTCTTCCCCCTGCGAGATCCTCTGGGCTCCTTCATCGCTGTCTGCTGCAGTTTTCCTTGATGCTTCGGGACCAAAAGTGCGAGTCTTTGTGGTGGAGCTCGAGTCGCTATATTGCTTTCTGACCTTGGCAGTCCGTTGCTCCCCTATACCTTGCTTTAAAGAGAGGAGTTTAGGTACGGCCGAGCTTGTACTGGGACTAAACCGGTCAGACTGACTGGCTCCCTCATCTTGGATTTTAGTTCTTTGCGGACTGCTTTCCGAAGATGAGATCCATGGATAATCCCTTCTGGCGAGAGAAAAAGGGGAGTCTTCTTTGGGAGAGGTGGGTGAAGGGGTGGACGACGACTGTCGTTCCAGTTTGGGCCGTGATGGGGGTCGGAGCTGCACCATTTGGATGCCCCCAATGGGAATCATGTGATAGGGCATGCGGGCTTGATCTTGGGAGTGCAAAGGAAGGTGGCTAAACATGCGGTCCACTGTCCATGGAGTCACTGGAGCTGGAGGGAAAGGCTCGCAGGGAGGAAAGCGCTGGGATGGGGAAAGCAGGCAGGGATCTGGAGCTGCTTGAGTACCAGGTTTGTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020024 lncRNA upstream 326430 33992319 ~ 33993459 (+) False XLOC_010076
TCONS_00020020 lncRNA upstream 376161 33939990 ~ 33943728 (+) True XLOC_010073
TCONS_00021975 lncRNA upstream 563510 33752361 ~ 33756379 (+) True XLOC_010070
TCONS_00021728 lncRNA upstream 1026109 33291419 ~ 33293780 (+) True XLOC_010066
TCONS_00020009 lncRNA upstream 1031681 33255079 ~ 33288208 (+) False XLOC_010066
TCONS_00020032 lncRNA downstream 155990 34478997 ~ 34502203 (+) False XLOC_010082
TCONS_00020033 lncRNA downstream 170980 34493987 ~ 34502203 (+) False XLOC_010082
TCONS_00021978 lncRNA downstream 174093 34497100 ~ 34502203 (+) True XLOC_010082
TCONS_00021979 lncRNA downstream 590277 34913284 ~ 34916253 (+) False XLOC_010086
TCONS_00021980 lncRNA downstream 590280 34913287 ~ 34916253 (+) False XLOC_010086
TCONS_00020031 mRNA upstream 145629 34160835 ~ 34174260 (+) True XLOC_010079
TCONS_00020029 mRNA upstream 184645 34111929 ~ 34135244 (+) False XLOC_010078
TCONS_00020028 mRNA upstream 187918 34111919 ~ 34131971 (+) False XLOC_010078
TCONS_00020030 mRNA upstream 201879 34111963 ~ 34118010 (+) True XLOC_010078
TCONS_00020027 mRNA upstream 263446 34046733 ~ 34056443 (+) True XLOC_010077
TCONS_00020034 mRNA downstream 199970 34522977 ~ 34532805 (+) False XLOC_010083
TCONS_00020035 mRNA downstream 200508 34523515 ~ 34527206 (+) True XLOC_010084
TCONS_00020036 mRNA downstream 205402 34528409 ~ 34531851 (+) False XLOC_010083
TCONS_00020037 mRNA downstream 208479 34531486 ~ 34532888 (+) True XLOC_010083
TCONS_00020040 mRNA downstream 1020486 35343493 ~ 35379565 (+) False XLOC_010088
TCONS_00020014 other upstream 563510 33752102 ~ 33756379 (+) False XLOC_010070
TCONS_00020013 other upstream 586511 33719969 ~ 33733378 (+) True XLOC_010069
TCONS_00020010 other upstream 976624 33343151 ~ 33343265 (+) True XLOC_010067
TCONS_00019992 other upstream 1646953 32672820 ~ 32672936 (+) True XLOC_010055
TCONS_00019985 other upstream 2123122 32192197 ~ 32196767 (+) True XLOC_010050
TCONS_00020038 other downstream 401561 34724568 ~ 34724682 (+) True XLOC_010085
TCONS_00020039 other downstream 883848 35206855 ~ 35280788 (+) True XLOC_010087
TCONS_00020045 other downstream 1079054 35402061 ~ 35405887 (+) True XLOC_010091
TCONS_00020056 other downstream 1403011 35726018 ~ 35726132 (+) True XLOC_010096
TCONS_00020068 other downstream 2259479 36582486 ~ 36584785 (+) False XLOC_010109

Expression Profile

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