RNA id: TCONS_00020037


Basic Information

Item Value
RNA id TCONS_00020037
length 1403
RNA type mRNA
GC content 0.49
exon number 1
gene id XLOC_010083
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 34522977 ~ 34532888 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATACAGATCTCACAAAAGACTGCAGCTTAATTAATCCTCACCATGGCGACGGTTGTGATGGAGCAGATTGGGCGGCTGTTCATCAACGCACAGCAGCTTCGCCAGATCCCTCGTTTCCTGGAGTCAGCCTTCCCAAAACTGCCCTGTACTGTGATGGTGAGCGACGTGCCATGGGTTTTCCGTGAGTCACACATAATCACGGGCTACAGGCCGCCTGACCAGAACTGGCGCTACTACTTCCTTACTTTGTTCCAGAGGCATAACGAATCTGTAAATGTGTGGACACACCTTCTGGCCTCCCTCATTATTTTAGTCAAGTTTCAGGAGCTGTCTGAAACCGTAGACTTCCTGCGAGATCCGCACGCCCAACCGATGTTCATCTTACTCCTGGCCGCATTCACCTACTTGGGGTGCAGTGCATTGGCACATCTTCTCTCGGCCAAGTCTGAGATCTCCCACTACACCTTTTATTTTTTGGACTACGTAGGTGTAGCTGTATACCAATATGGTAGTGCCCTCGCCCACTTCTATTATGTGGTGGAAGAAGAATGGCACGCTCAAGTGCGAACTTTTTTCTTGCCAGCCTCAGCCTTCTTGGCCTGGCTGTCCTGTACGGGCTGCTGCTATGGCAAGTACGCCAGCCCAAAATTGCCAAAGTTTGTTCACAAGCTATTTCAAGTTGTGCCCTCGGGCCTGGCCTACTGTTTAGACATCAGTCCGGTGTTGCATCGCATCTATAGATGCTACAGCTCTGAACATTGGTGTGCCGACCAGGCAGTGGTCTACCACTGCTACCAAGTCCTCTTCTTTTTAATCAGCGCCTACTTCTTCTCGTACCCCCATCCCGAGCGCTGGTTCCCAGGACGTTGCGACTTCATCGGGCAGGGCCATCAGATCTTCCATGTGTTCCTTGTGCTCTGCACTCTAGTGCAGATCGAAGCTGTTCGACTGGATTACACAGAGAGAAGACGTCTCTACGAACATCTCCATGGTGATTTGGCTCATGATGCAGTGGCTCTTTTTATCTTCACAGCGTGTTGCAGCGCACTCACCGCGTTCTACGTGCGCAAACGGGTGAAGACGTATCTAGAAGAGAAGCAGGAGTAGATGTCGTGGTAGGGACCTTGCTTGCACATGCAGGAAGGATCGTGCTGGTCTACAAGAACTGAAACAACTAACATTTTTTCGTGTATCTTATATTTGTTGTTAATGGTTTGGTTATGTGGCCTGCCAACACGTTTTTTAACCAACTGCTTTCTGTTGACCAAACTGGTGACATGCTTTAAAACCTCATTACAGTTTGAGAATGGTTCGAAAACAATGGATTGCCTGCTGAAAGGTGCTCAGATCTGTTAGCTGATCTGTTTGATGAGTGCCATGACAACCTTTTAAACCTGGTATAC

Function

GO:

id name namespace
GO:0007193 adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway biological_process
GO:0048477 oogenesis biological_process
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0048545 response to steroid hormone biological_process
GO:0001556 oocyte maturation biological_process
GO:0000187 activation of MAPK activity biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0005496 steroid binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030728-2 Enables steroid binding activity and steroid hormone receptor activity. Involved in adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway and steroid hormone mediated signaling pathway. Acts upstream of or within oocyte maturation; response to steroid hormone; and signal transduction. Located in plasma membrane. Is expressed in several structures, including brain; gill; gonad; intestine; and sperm. Orthologous to human PAQR7 (progestin and adipoQ receptor family member 7).

Ensembl:

ensembl_id ENSDART00000043291

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020032 lncRNA upstream 29283 34478997 ~ 34502203 (+) False XLOC_010082
TCONS_00020033 lncRNA upstream 29283 34493987 ~ 34502203 (+) False XLOC_010082
TCONS_00021978 lncRNA upstream 29283 34497100 ~ 34502203 (+) True XLOC_010082
TCONS_00021977 lncRNA upstream 208479 34319889 ~ 34323007 (+) True XLOC_010081
TCONS_00021976 lncRNA upstream 210107 34315762 ~ 34321379 (+) True XLOC_010080
TCONS_00021979 lncRNA downstream 380396 34913284 ~ 34916253 (+) False XLOC_010086
TCONS_00021980 lncRNA downstream 380399 34913287 ~ 34916253 (+) False XLOC_010086
TCONS_00021982 lncRNA downstream 380401 34913289 ~ 34916253 (+) False XLOC_010086
TCONS_00021981 lncRNA downstream 380401 34913289 ~ 34916253 (+) False XLOC_010086
TCONS_00021983 lncRNA downstream 380447 34913335 ~ 34916253 (+) True XLOC_010086
TCONS_00020035 mRNA upstream 4280 34523515 ~ 34527206 (+) True XLOC_010084
TCONS_00020031 mRNA upstream 357226 34160835 ~ 34174260 (+) True XLOC_010079
TCONS_00020029 mRNA upstream 396242 34111929 ~ 34135244 (+) False XLOC_010078
TCONS_00020028 mRNA upstream 399515 34111919 ~ 34131971 (+) False XLOC_010078
TCONS_00020040 mRNA downstream 810605 35343493 ~ 35379565 (+) False XLOC_010088
TCONS_00020041 mRNA downstream 811143 35344031 ~ 35369344 (+) True XLOC_010088
TCONS_00020042 mRNA downstream 846832 35379720 ~ 35383122 (+) True XLOC_010089
TCONS_00020043 mRNA downstream 862709 35395597 ~ 35398512 (+) True XLOC_010090
TCONS_00020044 mRNA downstream 868655 35401543 ~ 35405880 (+) False XLOC_010091
TCONS_00020014 other upstream 775107 33752102 ~ 33756379 (+) False XLOC_010070
TCONS_00020013 other upstream 798108 33719969 ~ 33733378 (+) True XLOC_010069
TCONS_00020010 other upstream 1188221 33343151 ~ 33343265 (+) True XLOC_010067
TCONS_00019992 other upstream 1858550 32672820 ~ 32672936 (+) True XLOC_010055
TCONS_00019985 other upstream 2334719 32192197 ~ 32196767 (+) True XLOC_010050
TCONS_00020038 other downstream 191680 34724568 ~ 34724682 (+) True XLOC_010085
TCONS_00020039 other downstream 673967 35206855 ~ 35280788 (+) True XLOC_010087
TCONS_00020045 other downstream 869173 35402061 ~ 35405887 (+) True XLOC_010091
TCONS_00020056 other downstream 1193130 35726018 ~ 35726132 (+) True XLOC_010096
TCONS_00020068 other downstream 2049598 36582486 ~ 36584785 (+) False XLOC_010109

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_00206576_00207640.mRNA True 1360 mRNA 0.51 1 CI01000016 206576 ~ 207935 (+)