RNA id: TCONS_00020035


Basic Information

Item Value
RNA id TCONS_00020035
length 1687
RNA type mRNA
GC content 0.39
exon number 5
gene id XLOC_010084
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 34523515 ~ 34527206 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTTTTGCGCGAAGCGAACCGTTGATGCTGAGGCAGAGAGGAATCTGCGCGCGGGCAACTCCTTCCCTGATTTCCACTTCTTCTGAAGGTGTCTGAAACCGTCGAAGTAGAAAGTGCAATGGCGTCCTCTGGAGCTGATATCCAGGTCAAGGAACTGGACAAGCGTGCCTCAGGACAGGCTTTTGAGGTCATCCTGAGTCCCACGGCTCCAGATGCCAAGGGAGAATTCCCACTTTCCACCCCCAAGAAGAAGGAGGTTTCTTTGGATGAGATCCAGAAAAAACTAGATGCAGCAGAGGAGAGACGCAAGAACCATGAGGCAGAGGTACTGAAGCACTTAGCTGAGAAACGAGAGCATGAGAAGGAGGTCCTTCAGAAAGCTATGGAGGAGAACAACAACTTCAGCAAGATGGCAGAGGAGAAACTTAACCAGAAAATGGAAGCCAACAAAGAAAACCGCACAGCACGCATGGCAGCTATGAATGAGAAATTCAAAGAGAAGGACAAGAAGCTTGAAGAGGTACGAaagaacaaagaaacaaaagaggGAGGCGAGGATGAAAACTAAGTCTCACCTCTCATTTTCCTTTTCATTTAGGGTATAGTATTGGGTTTTTTAATGTatccaaagatttattttttgttccatTAAATGGCCAGTTTTCCGTGTTTGGATCCATGTACTTGCCACTTTTTTATTAAGGAGTTTTGGGGAAAAGCTGGTGCACAAAATTTCATCACTTTGTGTGTAATCAGTTCTGTCTTTCATCATCCCCTCTAACCTGTAGATTTGTCCAGTTGCAACTCTATAGCGTTTAAAACGAGCAGCGTAGGGAAGCATGCCTGTGTTATGCATAGGTCTAATATATACTTGGTATACTGCATTGTGCAAGTCCACCTGTTCCCTTGTATGTCAGTACTGCCATCCTTTGAGCTTAATAAAGTTGCACAGTTGTTTGTTATTGTGCCAGTTTTGCCACTGCCTCTTTGTTGATCTGTCAGTCAGCCAGAGTGTAATgtggagtaaaaaaaaactttcacaatTTGTACATTATGGAGTTGAATGGCAGTTACTGGAAAATAGGTTTTGCCAGAATAATCAGATCTTTTggacactttttgatgtactctTTGTAATCTGCATGGTATTCTTAGTGTTAACAACACATTTCATTATCCGCAAGCATTTCCTTTACTGGACCATACTTTTATAGTTATTCATATTCAATATGcactaataaaaaaagaaactactTGCAATGTGTGAacattaaaaaactaataaaaatgtcgCTTGAGACTGTATTTGAACAATACTGGCATCTAGTGGTTGTGAGTTTGTCAAGCAGTTATTAGAATAAACGTGTCTCAAAatgatttcagaaaaaaaaaacattgagacaTCGACAGCTATTATTGATTCATCCTTTGTTGCAGGAACAGTTAGATGCATGAACATTTATGGAAGTAGTTAACAGCTTTGCAGTGATAAATGGCTTGTCCACATGCCGTCACATTATTATGTGTTGAGAAATagtgcatcaatcttttctaaaaatgaATCCAACCTTATTTTATGATTCTGAACTCCCTTAGAAGCAATTACATGCATCCAAAAAGATCATGTCCAGTACTATGTtgtgtgaataaatgtttttttaatcgaataaaataaaaatgaaatcaa

Function

GO:

id name namespace
GO:0051493 regulation of cytoskeleton organization biological_process
GO:0007019 microtubule depolymerization biological_process
GO:0031110 regulation of microtubule polymerization or depolymerization biological_process
GO:0031175 neuron projection development biological_process
GO:0043005 neuron projection cellular_component
GO:0005737 cytoplasm cellular_component
GO:0015631 tubulin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-397 Predicted to enable tubulin binding activity. Predicted to be involved in microtubule depolymerization; neuron projection development; and regulation of microtubule polymerization or depolymerization. Predicted to be active in cytoplasm and neuron projection. Is expressed in nervous system; neural crest; neural tube; and trigeminal placode. Orthologous to human STMN1 (stathmin 1).

Ensembl:

ensembl_id ENSDART00000041007

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020032 lncRNA upstream 21312 34478997 ~ 34502203 (+) False XLOC_010082
TCONS_00020033 lncRNA upstream 21312 34493987 ~ 34502203 (+) False XLOC_010082
TCONS_00021978 lncRNA upstream 21312 34497100 ~ 34502203 (+) True XLOC_010082
TCONS_00021977 lncRNA upstream 200508 34319889 ~ 34323007 (+) True XLOC_010081
TCONS_00021976 lncRNA upstream 202136 34315762 ~ 34321379 (+) True XLOC_010080
TCONS_00021979 lncRNA downstream 386078 34913284 ~ 34916253 (+) False XLOC_010086
TCONS_00021980 lncRNA downstream 386081 34913287 ~ 34916253 (+) False XLOC_010086
TCONS_00021982 lncRNA downstream 386083 34913289 ~ 34916253 (+) False XLOC_010086
TCONS_00021981 lncRNA downstream 386083 34913289 ~ 34916253 (+) False XLOC_010086
TCONS_00021983 lncRNA downstream 386129 34913335 ~ 34916253 (+) True XLOC_010086
TCONS_00020031 mRNA upstream 349255 34160835 ~ 34174260 (+) True XLOC_010079
TCONS_00020029 mRNA upstream 388271 34111929 ~ 34135244 (+) False XLOC_010078
TCONS_00020028 mRNA upstream 391544 34111919 ~ 34131971 (+) False XLOC_010078
TCONS_00020030 mRNA upstream 405505 34111963 ~ 34118010 (+) True XLOC_010078
TCONS_00020027 mRNA upstream 467072 34046733 ~ 34056443 (+) True XLOC_010077
TCONS_00020036 mRNA downstream 1203 34528409 ~ 34531851 (+) False XLOC_010083
TCONS_00020037 mRNA downstream 4280 34531486 ~ 34532888 (+) True XLOC_010083
TCONS_00020040 mRNA downstream 816287 35343493 ~ 35379565 (+) False XLOC_010088
TCONS_00020041 mRNA downstream 816825 35344031 ~ 35369344 (+) True XLOC_010088
TCONS_00020042 mRNA downstream 852514 35379720 ~ 35383122 (+) True XLOC_010089
TCONS_00020014 other upstream 767136 33752102 ~ 33756379 (+) False XLOC_010070
TCONS_00020013 other upstream 790137 33719969 ~ 33733378 (+) True XLOC_010069
TCONS_00020010 other upstream 1180250 33343151 ~ 33343265 (+) True XLOC_010067
TCONS_00019992 other upstream 1850579 32672820 ~ 32672936 (+) True XLOC_010055
TCONS_00019985 other upstream 2326748 32192197 ~ 32196767 (+) True XLOC_010050
TCONS_00020038 other downstream 197362 34724568 ~ 34724682 (+) True XLOC_010085
TCONS_00020039 other downstream 679649 35206855 ~ 35280788 (+) True XLOC_010087
TCONS_00020045 other downstream 874855 35402061 ~ 35405887 (+) True XLOC_010091
TCONS_00020056 other downstream 1198812 35726018 ~ 35726132 (+) True XLOC_010096
TCONS_00020068 other downstream 2055280 36582486 ~ 36584785 (+) False XLOC_010109

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU106770 True 1744 lncRNA 0.38 5 CI01000016 199158 ~ 202946 (-)