RNA id: TCONS_00021980


Basic Information

Item Value
RNA id TCONS_00021980
length 2885
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id XLOC_010086
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 34913284 ~ 34916253 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCTTAGAACATTTTATTGTTGTCTGAAGACCCCGTCCCACCCCAACCCTCAGTTCCCCGTGAGATATATACCTCTGCATCCTCTTCCTGTCCCACAAACACATGGTCAAAAACACAGTTCTTTTTCAGTCCATTCAGTATCATACAGAAACActtggaaacaaacaaacaaacaaaaacgcaCGAAAAAACAAGAACCTGGCTCAACATCTGTCAACAAGTCCTTCCTTTCTCTGCATACTGAAACAACAAGGACAATAATTATGCAGAATTAGTGACTACCATTAGAAGTTGGCTAATGTCTTTGGGATGAGCATggcattaaaacaataataaagcaaTCACTGAATGGTTTTAAAGTGACTGTATGGGCCGTCAGAAGGGGCGACTTTGGAATGGCTTTTAGAGATCATCCTCAGCTAAACTGAGCATGTGTCAAATCTTTTGgcgacattttcagaaaaaaagtacAGTACATTCAACTCTTTCTGTTACTTTTAAATGGTTAAATCTGGCCGAACAAACTTCAGGATTCACATACTATTCACAGAACACAAATATACATCTATATGTACACAAACCTTCCACTTGAACTCTGAGTGTCCAGGCACTTTCCAAGAAAGTCAACAGGGGAGTGTTGGTGAAAAATCAATCACAgaaatttcttttcaaacatgTTTTCAATGACTGTCTTACAGGAACAGTTTAGCCAAAAATGAATAGTCTACCATCATCTTGTCCCAAGCTGTAATGATTCATCTAAAACTTCTCCTTTTGCATTTTCAGTAAGAATTTAAGTACTAGGTGTTTGGGAACAGCATGAGGAttagtaaataatggcagaagtTGCTTTAACTAGCTGGTTATCAGGCATATATTGGGGTGGACTGTGTCATGTTGACATCTGAGAAGCTTAATGCAGACTAATGTAATCATTGGGAAAATGCCTCTGTGGTTTGCTAACTTGGCATCTTGCTGATATGGCAATTTCACAGTTGGGGTCATAACAGTTTCAGAGATGTGTTTGTAATACTGATGGGGATACTCTGACCATTTGTATTTAGAGTTTGTAGTTAAAGTAGTGTCATTAATTAGTGGTAATTACAGTTTGTATTTCCATCACTGTTCTACCTACACTAAAATGTCCGGTGGAAACTTCTATGAATAAAACACAAAGTAGCTCTTAGAAAATAATGATTATTTGATGAACTAATAGACAGTGAACAATGGTTTCTCAACATcataaaaatgtagatttttaccCTCAGAAGGTCATTTCAAGTTTATATGAGCTGTATTTAAAGCCCTAATACAAAAAGAAATCTAATAGAAATAATCAATCTAAATGCTTAAAATGACAAATACAGCCTTATTTAATCAACTGAAgctatttatataatattattttaaacaatatggCCCAAAAGAAGAGAAATCTCAAATTTGTCAAATTGatattaaattaaactgtatttaaaaccAATAAAAACAAGTGTCAACTTTAAAGCATGCTAAAATATGGGTGAATTATAAACTGTAATATTTTGCTTTCGAGAATTTTAATAAGCATAAAGACCTCTGAGGTGTGAATGGCCAAATCTAATGATTCAAATATGGGATTTGCATCTCCGATGCTTGAAATGAATGATCTACAGTATACTGTATTAATGGAAAGCACACTTATCACATGTCCTGCTATTGTAAGAAAACAGCCATCACACACTGCGATGGAACATAAATGTACCTTGAACGTGGATAAACATAAAGCGATGCTATGATGAACCTCGAGCCCAGGATTCAGCTGTACACTCAAAGCTGCACAATTGTTAAACAAAATCCACTCAGAGAACACGAGTCAGTCCGATAAATAGTTACGAGTGAAAAGAAGAAGATTTGCCGGTGTTCCTTTTGGTCCTTTCTCTTCACGTCTGACACAGTTTCATCTACTGTTCCCGTTGTAAAAAGACTATTAACTGCGCTCTCTCAAAACCACTGAGTGAGAGGATAAAGGTCAGGGTGTAATCCATCGCAAGCTTTACAATGCCATCACGTCTGCCCCTTCTTAATGTACTTCCTTCGCTTTAAGCACACAGGGCCACTGTTAGCACTTGAGACTTACACCTTAAGACGTAAGGGATTTCCAGCAGACAttaagtgtgtatgtatgtgtataatatatatatatatacaagtgAGAGGAAAAAGACAACAGTCACAACAAGATAAAAAAGCCAAAGTATGGCCATCTGACTCTTCCGTCAATTTCCTCATATGGCACCATATATAGTAACAAACTCCGCCTCTGATGATACAATAACCAATCAGACGAGAGGAAAACTTGTATCGCTGTTGCTGGAAACGTTGCCGAAGAGGCATCTGCTTCTTGATAGGCAGTTGATGGAAAGTTGTCTGCTGGctgattctgtgtgtgtgtggggatgtgcatgcatgtgtgtttgtgttgtcctCTTTTAAAATGGGCACTGCAGGTGCCTGACTCCTGTTTTTAAGAGCCACGGTAGAGACGCCCGACTTTCAACTCCACATGAAGAGAAGATCTTCTCCAAGAGATGTTTATTTCGGCTCTTCAGTCCAGAACGTCGGAGATAAACAGGCAGGTGTAAAATAAAGCCGCTGTTTTTAGAAACGGCACACTATCTCTGTGAGCAGAGCTAAAGCAACCACACCGCACCAAGCCAGGCTCGCTGAAAATATCCGAAACTGAAAGAACACAACCTATTTGGATGTTTGGGGTAAAAAGGCAGAgaacttgacttcttgttttttttttgtgtgtgtctcatCTGGATCTAGGTACGATGGCAGAAAGTAGGGCAGCAGAGGGAGGTAAGGGGTATGATTGAGCCTGCTGGTGGTCCTGCTCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020032 lncRNA upstream 411084 34478997 ~ 34502203 (+) False XLOC_010082
TCONS_00020033 lncRNA upstream 411084 34493987 ~ 34502203 (+) False XLOC_010082
TCONS_00021978 lncRNA upstream 411084 34497100 ~ 34502203 (+) True XLOC_010082
TCONS_00021977 lncRNA upstream 590280 34319889 ~ 34323007 (+) True XLOC_010081
TCONS_00021976 lncRNA upstream 591908 34315762 ~ 34321379 (+) True XLOC_010080
TCONS_00021984 lncRNA downstream 639513 35555766 ~ 35556976 (+) True XLOC_010093
TCONS_00021729 lncRNA downstream 861422 35777675 ~ 35780839 (+) True XLOC_010097
TCONS_00021730 lncRNA downstream 899136 35815389 ~ 35817061 (+) True XLOC_010098
TCONS_00020063 lncRNA downstream 1001786 35918039 ~ 35927160 (+) False XLOC_010100
TCONS_00021985 lncRNA downstream 1117165 36033418 ~ 36038394 (+) True XLOC_010101
TCONS_00020037 mRNA upstream 380399 34531486 ~ 34532888 (+) True XLOC_010083
TCONS_00020034 mRNA upstream 380482 34522977 ~ 34532805 (+) False XLOC_010083
TCONS_00020036 mRNA upstream 381436 34528409 ~ 34531851 (+) False XLOC_010083
TCONS_00020035 mRNA upstream 386081 34523515 ~ 34527206 (+) True XLOC_010084
TCONS_00020031 mRNA upstream 739027 34160835 ~ 34174260 (+) True XLOC_010079
TCONS_00020040 mRNA downstream 427240 35343493 ~ 35379565 (+) False XLOC_010088
TCONS_00020041 mRNA downstream 427778 35344031 ~ 35369344 (+) True XLOC_010088
TCONS_00020042 mRNA downstream 463467 35379720 ~ 35383122 (+) True XLOC_010089
TCONS_00020043 mRNA downstream 479344 35395597 ~ 35398512 (+) True XLOC_010090
TCONS_00020044 mRNA downstream 485290 35401543 ~ 35405880 (+) False XLOC_010091
TCONS_00020038 other upstream 188605 34724568 ~ 34724682 (+) True XLOC_010085
TCONS_00020014 other upstream 1156908 33752102 ~ 33756379 (+) False XLOC_010070
TCONS_00020013 other upstream 1179909 33719969 ~ 33733378 (+) True XLOC_010069
TCONS_00020010 other upstream 1570022 33343151 ~ 33343265 (+) True XLOC_010067
TCONS_00019992 other upstream 2240351 32672820 ~ 32672936 (+) True XLOC_010055
TCONS_00020039 other downstream 290602 35206855 ~ 35280788 (+) True XLOC_010087
TCONS_00020045 other downstream 485808 35402061 ~ 35405887 (+) True XLOC_010091
TCONS_00020056 other downstream 809765 35726018 ~ 35726132 (+) True XLOC_010096
TCONS_00020068 other downstream 1666233 36582486 ~ 36584785 (+) False XLOC_010109
TCONS_00020072 other downstream 1832353 36748606 ~ 36749324 (+) False XLOC_010112