RNA id: TCONS_00020039


Basic Information

Item Value
RNA id TCONS_00020039
length 493
RNA type processed_transcript
GC content 0.29
exon number 2
gene id XLOC_010087
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 35206855 ~ 35280788 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttaagtgtttCTTAAATAGCACAAATTTGTGTCAGTggatttatattttaatacagtaaatatttttaaaggccATATTCTCAAAATgagtgtttttttctctctttctctgagcCATACAGTAAATCTCTGCTTGAGCAGCACTTACAAACCTCACATTTGTATTCTGAAGGGTTTTAGACGCAAATGTGCATACATAATTTacctgattatattatattataacattttacTCTACAAAACCATGAAAATTCCTTCTTTTTCTGGCTAGGTTACGGTTATTATTGGAGTGATAAAAAAAGAGTGTCAAAATCCTTTCTTTTaatagaaaaaattaaacaattgaaCCTGACTTAATCCAATGTTAGTTTGTTTTTTCTGATATTAATATTTAAGGattatctgaaagctgaataaataagcttttcattgatgtatggtttgttatggtaaaatatttggcagagatacaactatttaaacGTCTGGAGTC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000162602

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021979 lncRNA upstream 290602 34913284 ~ 34916253 (+) False XLOC_010086
TCONS_00021980 lncRNA upstream 290602 34913287 ~ 34916253 (+) False XLOC_010086
TCONS_00021982 lncRNA upstream 290602 34913289 ~ 34916253 (+) False XLOC_010086
TCONS_00021981 lncRNA upstream 290602 34913289 ~ 34916253 (+) False XLOC_010086
TCONS_00021983 lncRNA upstream 290602 34913335 ~ 34916253 (+) True XLOC_010086
TCONS_00021984 lncRNA downstream 274978 35555766 ~ 35556976 (+) True XLOC_010093
TCONS_00021729 lncRNA downstream 496887 35777675 ~ 35780839 (+) True XLOC_010097
TCONS_00021730 lncRNA downstream 534601 35815389 ~ 35817061 (+) True XLOC_010098
TCONS_00020063 lncRNA downstream 637251 35918039 ~ 35927160 (+) False XLOC_010100
TCONS_00021985 lncRNA downstream 752630 36033418 ~ 36038394 (+) True XLOC_010101
TCONS_00020037 mRNA upstream 673967 34531486 ~ 34532888 (+) True XLOC_010083
TCONS_00020034 mRNA upstream 674050 34522977 ~ 34532805 (+) False XLOC_010083
TCONS_00020036 mRNA upstream 675004 34528409 ~ 34531851 (+) False XLOC_010083
TCONS_00020035 mRNA upstream 679649 34523515 ~ 34527206 (+) True XLOC_010084
TCONS_00020031 mRNA upstream 1032595 34160835 ~ 34174260 (+) True XLOC_010079
TCONS_00020040 mRNA downstream 62705 35343493 ~ 35379565 (+) False XLOC_010088
TCONS_00020041 mRNA downstream 63243 35344031 ~ 35369344 (+) True XLOC_010088
TCONS_00020042 mRNA downstream 98932 35379720 ~ 35383122 (+) True XLOC_010089
TCONS_00020043 mRNA downstream 114809 35395597 ~ 35398512 (+) True XLOC_010090
TCONS_00020044 mRNA downstream 120755 35401543 ~ 35405880 (+) False XLOC_010091
TCONS_00020038 other upstream 482173 34724568 ~ 34724682 (+) True XLOC_010085
TCONS_00020014 other upstream 1450476 33752102 ~ 33756379 (+) False XLOC_010070
TCONS_00020013 other upstream 1473477 33719969 ~ 33733378 (+) True XLOC_010069
TCONS_00020010 other upstream 1863590 33343151 ~ 33343265 (+) True XLOC_010067
TCONS_00019992 other upstream 2533919 32672820 ~ 32672936 (+) True XLOC_010055
TCONS_00020045 other downstream 121273 35402061 ~ 35405887 (+) True XLOC_010091
TCONS_00020056 other downstream 445230 35726018 ~ 35726132 (+) True XLOC_010096
TCONS_00020068 other downstream 1301698 36582486 ~ 36584785 (+) False XLOC_010109
TCONS_00020072 other downstream 1467818 36748606 ~ 36749324 (+) False XLOC_010112
TCONS_00020082 other downstream 2490695 37771483 ~ 37771600 (+) True XLOC_010119