RNA id: TCONS_00020041


Basic Information

Item Value
RNA id TCONS_00020041
length 1476
RNA type mRNA
GC content 0.51
exon number 12
gene id XLOC_010088
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 35343493 ~ 35379565 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGACATGAAGTAAAACTCATGAACGAGTCCGCGAAGGGAAGGAGGAATCCCGCAGGAAAACATGCATGCCAGTTATGGAGCTCTTTGGAATACTGTGGAATTTTTTCGGGTTTGGCTTATTCTCAGCATCGAAGCACTGGTCTTGGTATACGGCCAAAAGGGCGATGGGTGTGGACACACAGTCCTCGGTCCCAGCAGTGGCACACTGACCTCGCTGAACTTCCCAGGAACCTACCCCAACCACACCCAGTGTGAATGGACTTTAAAGGTAGCGAAGGGCCAGACGCTGCTCTTGACCTTTGGGGATTTTGACTTGGAGAGGAGCCAAGACTGCATATCTGGCTCTCTCACCATCACAGACAGCAGTGGAGCCACCAGAGTGGGTCCTTTGTGTGGGCAGTTGTCGACCACAAACAGGAACATATCTGTGAGTACCAATGAAATAACAGTGCATTTCATCTCAGGCACTCACCGATCAGGACGGGGCTTCGTCATGTCTTATTCAACCAATCAGCACTCAGAACTCATTTCATGCCTGCATCGAGGGACGCATTTCTCCTCCCAGCAGATCAGTGCGTTCTGTCCTGCAGGCTGCAGAGGGGTTGCAGGAGAAATCTGGGGCTGGCATGGACAGGGATACCGTGATACATCAGTGTTATGTAAAGCTGCGGTCCATGCAGGGGTGATTTCAGACAGTTTGGGCGGCATGATCAATGTGTCTCTGCAGAGGGGCATTACCTTGTACGAGTCGAACTTCGCTAACGGAGTACTATCAAAAACCGGATCCTTATCAGACAAACGAGTTGTCTTCTTTAAAGAGTGTAATAGGGAGCTGATGGTGATGGCCTATAACACCTCTTCAGTTTGGGACGAGGTCAACAGGCTGGGCCAGAAGGTATCCTGGTCTCCGGAGCTCGACGGCTCTCAGTGGGCTGCCAGCTCTGCAGATCAGCAACCTTGGATGGAAGTCGAGCTCTGGAACAGGAGTACGGTCACAGGCATCATAACAAAGGGTACGCCACATTACTACATTGAATCTTACACCATCATGTACAGCAAAGACCGCAAAACCTGGAAGGCCTACAAAGCAGCGTCAAGCAAAGACAAGAAGGTGTTTGAGGCCCACTCTGATGGTCACGTGATGGTCCTCAACAGTCTAATTCCTCCAGTCATTGCCCGATACCTCTTGCTAAAACCCCAGAAGTGGCACATCAGGGCGTCTGCACAGGTTCAAGTGCTGGGCTGCCCTTCTGCCGCCCTCAGACCCCGTTCCCAAGGAGACGAGCTGAACACTAGGAAGGCAGTTGTCACAGAGACTTTGTCCATAGACACACTGCCCACCGAGAGCCCTGTGATCAAAAGAAGCTCAGGCCCCAGTCAAGCTGTGATATTAGTAGCGGGCATGGTTTTAGGAGCCGCTCTTTGTGTTGGTTGTCTTTTAGCTGGGCTTATTTTGTGGAGAAGGTAACAGTATT

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-338 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000167140

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021979 lncRNA upstream 427778 34913284 ~ 34916253 (+) False XLOC_010086
TCONS_00021984 lncRNA downstream 186422 35555766 ~ 35556976 (+) True XLOC_010093
TCONS_00021729 lncRNA downstream 408331 35777675 ~ 35780839 (+) True XLOC_010097
TCONS_00021730 lncRNA downstream 446045 35815389 ~ 35817061 (+) True XLOC_010098
TCONS_00020063 lncRNA downstream 548695 35918039 ~ 35927160 (+) False XLOC_010100
TCONS_00021985 lncRNA downstream 664074 36033418 ~ 36038394 (+) True XLOC_010101
TCONS_00020037 mRNA upstream 811143 34531486 ~ 34532888 (+) True XLOC_010083
TCONS_00020034 mRNA upstream 811226 34522977 ~ 34532805 (+) False XLOC_010083
TCONS_00020036 mRNA upstream 812180 34528409 ~ 34531851 (+) False XLOC_010083
TCONS_00020035 mRNA upstream 816825 34523515 ~ 34527206 (+) True XLOC_010084
TCONS_00020031 mRNA upstream 1169771 34160835 ~ 34174260 (+) True XLOC_010079
TCONS_00020042 mRNA downstream 10376 35379720 ~ 35383122 (+) True XLOC_010089
TCONS_00020043 mRNA downstream 26253 35395597 ~ 35398512 (+) True XLOC_010090
TCONS_00020044 mRNA downstream 32199 35401543 ~ 35405880 (+) False XLOC_010091
TCONS_00020046 mRNA downstream 165827 35535171 ~ 35537491 (+) False XLOC_010092
TCONS_00020047 mRNA downstream 166031 35535375 ~ 35536706 (+) False XLOC_010092
TCONS_00020039 other upstream 63243 35206855 ~ 35280788 (+) True XLOC_010087
TCONS_00020038 other upstream 619349 34724568 ~ 34724682 (+) True XLOC_010085
TCONS_00020014 other upstream 1587652 33752102 ~ 33756379 (+) False XLOC_010070
TCONS_00020013 other upstream 1610653 33719969 ~ 33733378 (+) True XLOC_010069
TCONS_00020010 other upstream 2000766 33343151 ~ 33343265 (+) True XLOC_010067
TCONS_00020045 other downstream 32717 35402061 ~ 35405887 (+) True XLOC_010091
TCONS_00020056 other downstream 356674 35726018 ~ 35726132 (+) True XLOC_010096
TCONS_00020068 other downstream 1213142 36582486 ~ 36584785 (+) False XLOC_010109
TCONS_00020072 other downstream 1379262 36748606 ~ 36749324 (+) False XLOC_010112
TCONS_00020082 other downstream 2402139 37771483 ~ 37771600 (+) True XLOC_010119

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_03072793_03080040.mRNA True 1156 mRNA 0.51 8 CI01000016 3072728 ~ 3080040 (-)