RNA id: TCONS_00020042


Basic Information

Item Value
RNA id TCONS_00020042
length 1883
RNA type mRNA
GC content 0.36
exon number 3
gene id XLOC_010089
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 35379720 ~ 35383122 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAATTATTCGTAGCATACCCAAGTAACTTACCTGGAATGAAAAGTGACAATCCATCCATATAGTCTATGTTTTATACCGTCTGCTAATTGGCTACTTGTGGATATCCTTTGTTTTTTCTTAAGTGAAACGAAGTGTGTCTTAAATaataaagaaatgtatcattttaaaataatcatgATAGGGGACAATGCGACAGGAAAGTCATGCATGATGTATCGATACAGAAATGGCTGTTTTAAGCATATGGATTGTACCATTGGAATGGATTTTTGCGCTAAATCCCTAGAGATGGAACCTGGTGTAAATGTGAATCTACAAATTTGGGATACACCTGGTCATGAACGATTTTGGGATGCCATTCTAGCTTATATTCCTCGATCTGCTGGATGCCTGCTGGTGTTTGACCTGGGTAATCGCGAGACtttcaactttattaaatttCGGTACTCAGCAGTGCGTACAAAAGCACATCCATACAGTGTGCTGTTTGTGCTGGTGGGAAACAAGTGTGACAGTGAAGAACGAGAAGTGAGTCAAGAAGAGGTGGAAGAGTTCGCAAGTGAAGTTGGAGCTCCGTATATCGAGACCTCGGCTAAAACAGGTCATAATGTGACAGAAGCTTTTGAGCTGTTGACCCGCCACATTTATCAGGGTTTGATAAGTGGAGAATTGCATCTGCATGAAAGCTGCATTGGGAAAGATtgagaacaaaaataaatgaccAGTCAAGATGAGCCAGCTGAGCACAACAAATACTGTGCCACATGAAGTCAACAGGAAACTGCAGTTGGAGAatgttttctatatttttatattctgaaatatttttttatattatgttttttcaGTATTCCTGAAAAATTAACTTGCATGAAACTAAACTTCTATTATCTATTTTCAGTTAACACTTCCCTCTTACATGTCATATAAACTATATTGCGAATAAAAACGTTTATATCCAGAAATAAACAGTACAGGGTTGATCAACTTTTTAACCTGAATAATTATGGTTTTACACTCTACCCGTGTTTAAAATGTCAGTGAAATTTTGGAATTGTCCATTGTCAGAAGCAAATCAGTCAGCATTCAATAAATGCACTTCTAGAATTTCATTACAGATTTATAGTCATCATCATCATGGCTGATGTACAATATGATTCATGTACAAACGTACATCCATACACCTGCTTGTGGGACGCGTACACTAAAAAAGAACAGGAAGTGATTTAAGTTGAAGCAGAAAAGAGCATCAAGTACAAGTCACAAACAAAGTGAATCTAACAACTTTCCTTAAATTGCATTATTGTTTGGTTTTAAACTTGAGGATAGTAATTTTGAAGTTTTACAAGCAATTTTATCAGTCTGATATGACTGCTCAGTCTTTGGTCGTCATTGTCTGGTTCCCCTTTTTATCATGGGCCAAACATTTTCCAAAACAGATCTGAAACAGATCTGGACTGCAGGCCATGGGATACTACACCTCTGTAGCACATGCAGAATAAGCCTTATCGAACTAATAATCTTGATCTCAATATCTGTCTCTGTATCCCAATTTAGGCCTCCATGTTAATAGTACTCAGCACATGTATACCAGACACCCATGCTTTAGCTCTGCTGCTGCCCACACCATGACAGACGCATCATTTTCTATGGTTAAAAAATTAACCTGAGAAATTagattgttgatttttttattctttttgtatAACATGATGAACCATGATCCAAAGGATGCTCCTTTTATACCCACACAATGAAACCCTCACAAGGTTTGGCTAATTATTATGGAccatttcaaacctgtttgatctgaatattatatactgtattttgcttttgtactttttatatgaaataaaagttCAAGAATATTAccaaaaa

Function

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-261 Predicted to enable GTP binding activity and GTPase activity. Predicted to be active in Golgi membrane.

Ensembl:

ensembl_id ENSDART00000170497

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021979 lncRNA upstream 463467 34913284 ~ 34916253 (+) False XLOC_010086
TCONS_00021984 lncRNA downstream 172644 35555766 ~ 35556976 (+) True XLOC_010093
TCONS_00021729 lncRNA downstream 394553 35777675 ~ 35780839 (+) True XLOC_010097
TCONS_00021730 lncRNA downstream 432267 35815389 ~ 35817061 (+) True XLOC_010098
TCONS_00020063 lncRNA downstream 534917 35918039 ~ 35927160 (+) False XLOC_010100
TCONS_00021985 lncRNA downstream 650296 36033418 ~ 36038394 (+) True XLOC_010101
TCONS_00020040 mRNA upstream 155 35343493 ~ 35379565 (+) False XLOC_010088
TCONS_00020041 mRNA upstream 10376 35344031 ~ 35369344 (+) True XLOC_010088
TCONS_00020037 mRNA upstream 846832 34531486 ~ 34532888 (+) True XLOC_010083
TCONS_00020034 mRNA upstream 846915 34522977 ~ 34532805 (+) False XLOC_010083
TCONS_00020036 mRNA upstream 847869 34528409 ~ 34531851 (+) False XLOC_010083
TCONS_00020043 mRNA downstream 12475 35395597 ~ 35398512 (+) True XLOC_010090
TCONS_00020044 mRNA downstream 18421 35401543 ~ 35405880 (+) False XLOC_010091
TCONS_00020046 mRNA downstream 152049 35535171 ~ 35537491 (+) False XLOC_010092
TCONS_00020047 mRNA downstream 152253 35535375 ~ 35536706 (+) False XLOC_010092
TCONS_00020048 mRNA downstream 152953 35536075 ~ 35536922 (+) True XLOC_010092
TCONS_00020039 other upstream 98932 35206855 ~ 35280788 (+) True XLOC_010087
TCONS_00020038 other upstream 655038 34724568 ~ 34724682 (+) True XLOC_010085
TCONS_00020014 other upstream 1623341 33752102 ~ 33756379 (+) False XLOC_010070
TCONS_00020013 other upstream 1646342 33719969 ~ 33733378 (+) True XLOC_010069
TCONS_00020010 other upstream 2036455 33343151 ~ 33343265 (+) True XLOC_010067
TCONS_00020045 other downstream 18939 35402061 ~ 35405887 (+) True XLOC_010091
TCONS_00020056 other downstream 342896 35726018 ~ 35726132 (+) True XLOC_010096
TCONS_00020068 other downstream 1199364 36582486 ~ 36584785 (+) False XLOC_010109
TCONS_00020072 other downstream 1365484 36748606 ~ 36749324 (+) False XLOC_010112
TCONS_00020082 other downstream 2388361 37771483 ~ 37771600 (+) True XLOC_010119

Expression Profile

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