RNA id: TCONS_00001577


Basic Information

Item Value
RNA id TCONS_00001577
length 1510
RNA type mRNA
GC content 0.46
exon number 4
gene id XLOC_000994
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 8127675 ~ 8141135 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACTGAAAGATGATCTGCTGCGGCTCTGCGGTCAACTGCGTTCTGTACTGAAGTAGGACTCTACCCGGGGAAACATGATCAAGTAACATCTGAGGGGCAGTTTCTATCTTTAGGACACAGTTTTACCttgatgtaaatatataaaaggaTTCTATACGACCGCCAATCCGCATTATTTGACAACAAAGTGCTTCCTTTAATATGGAAACGCTTTACACGAGGAACTTTTCCAGCCGTTAACGGAGGAAACACTTTTCCCCAAGACTTTATTTTGGGGGGATTACAGTAGCTCTTAACTAAATACATTACTTATAACTCGAAGAAAGAATATCCTTCTTTTATAAGCAATTTTGGATTGTTTTTGGAAACACAATGGCTCTCTCTCAGGTTCAGTGTCTTGATGACAATCATGTGAACTGGCGTCTAAATGAGTCCAAACCGGAGTTTTTCTACAGCGAGGACCAGCGGCTCGCTCTTGAATCTCTTGCCACGAAAGGACGCGACGCGTTTGACGCCTTTGTGAAGGAGCGTGAACTGCGTCCTTTCCTATCGGAACCCGAACTCGAGATGTTTCGCAGGAGCATAGAAGAGTATAAACCCGGCTCTGAGCATCAAAAACAGGATGGTATGACGGAGGGAGAGGACAGGGCAGTGTCTTTACAGTACTGGCCGGATCGCTCTGACACATCCATACCGAATCTGGATCTCGGATGGCCCGACTGCAATTCTTACCGCGGAGTGACGCGTGTTAATGTGTACACGCAACCGCCAATTGACGGACAAACGCATATAAAAGAGGTTGTGAGAAAGGCCATCGCGCAAGCACAGAAGatgaTAGCAGTGGTGATGGACGTTTTCACAGACGTTGACATTTTTAAGGATCTAATAGAGGCTGGTTTTAAAAAGAAAGTGGctatatacattattattgatAATGCAGCCGTACAGCACTTTCTCCTTATGTGCGAGAGAGCCAACATGCATAAAGGACACCTTAATCATCTGCGGGTACGATGCATCGGTGGTTCTGAATTCTACACACGCTCCGCTCAGAAAGTGCGAGGCTCATTGAGTCAGAAATTCATGTTTGTGGATGGAGACCGTGCTGTGTCCGGATCATACAGTTTTACATGGACTGCTTCTCGTTTGGACCGCAACATCATAACTGTTCTGACAGGACAGGCTGTTGAGACATTCGACAAGCAGTTCCGTGAATTATACATGAGTTCTCGTGGGGTCAACCTCTCCAAGATCCCAATGGCGGAACCTCCGGAGCCAGAACCTATTCCAGTCGCCGTTCCTCCCCCTGTTCCCGTAAATGTTGCAAGAAAAATGATCAACCCCAAATATGCGTTGGTCAATGCAGATGCTTCAAGCAAAGCATCTTCTGACAAAGCCAGTGCTAAGAACAGTAACACCCCAAATCCTATGGTCCAGCTTCCCAAGCCTCAACGGGAATTGCCGGAAGCACCACCAAAGCACCCAGGACTTGTAGGTTTGCCAAAGGCAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000152295

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002909 lncRNA downstream 214242 7915480 ~ 7920702 (-) False XLOC_000984
TCONS_00003330 lncRNA downstream 214244 7915480 ~ 7920700 (-) False XLOC_000984
TCONS_00003331 lncRNA upstream 61255 8202390 ~ 8205228 (-) True XLOC_000996
TCONS_00003332 lncRNA upstream 363842 8504977 ~ 8507689 (-) False XLOC_000998
TCONS_00001581 lncRNA upstream 365287 8506422 ~ 8510066 (-) True XLOC_000998
TCONS_00001583 lncRNA upstream 402017 8543152 ~ 8543611 (-) False XLOC_000999
TCONS_00001584 lncRNA upstream 402552 8543687 ~ 8545359 (-) False XLOC_000999
TCONS_00001575 mRNA downstream 33449 8022320 ~ 8101495 (-) True XLOC_000993
TCONS_00001574 mRNA downstream 114355 8017069 ~ 8020589 (-) True XLOC_000992
TCONS_00001573 mRNA downstream 122468 8001435 ~ 8012476 (-) True XLOC_000991
TCONS_00001572 mRNA downstream 134516 7994112 ~ 8000428 (-) True XLOC_000990
TCONS_00001571 mRNA downstream 136451 7993632 ~ 7998493 (-) False XLOC_000990
TCONS_00001578 mRNA upstream 24205 8165340 ~ 8192418 (-) True XLOC_000995
TCONS_00001579 mRNA upstream 274848 8415983 ~ 8428761 (-) False XLOC_000997
TCONS_00001580 mRNA upstream 280957 8422092 ~ 8428736 (-) True XLOC_000997
TCONS_00001582 mRNA upstream 398536 8539671 ~ 8553295 (-) False XLOC_000999
TCONS_00001585 mRNA upstream 408714 8549849 ~ 8553165 (-) False XLOC_000999
TCONS_00001570 other downstream 159175 7970406 ~ 7975769 (-) True XLOC_000989
TCONS_00001564 other downstream 214738 7920119 ~ 7920206 (-) True XLOC_000985
TCONS_00001563 other downstream 215377 7919480 ~ 7919567 (-) True XLOC_000984
TCONS_00001562 other downstream 216062 7918795 ~ 7918882 (-) False XLOC_000984
TCONS_00001556 other downstream 333298 7801531 ~ 7801646 (-) True XLOC_000982
TCONS_00001587 other upstream 411615 8552750 ~ 8553298 (-) True XLOC_000999
TCONS_00001595 other upstream 508974 8650109 ~ 8652655 (-) False XLOC_001004
TCONS_00001610 other upstream 976965 9118100 ~ 9118671 (-) False XLOC_001012
TCONS_00001617 other upstream 1056724 9197859 ~ 9197966 (-) True XLOC_001018
TCONS_00001629 other upstream 1318875 9460010 ~ 9486080 (-) False XLOC_001025

Expression Profile

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