RNA id: TCONS_00020057


Basic Information

Item Value
RNA id TCONS_00020057
length 687
RNA type mRNA
GC content 0.55
exon number 6
gene id XLOC_010095
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 35661331 ~ 35776074 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGCGATATGAGGCGGCCATCCAGAGGTCTGGTAAGAAGACGTGGGCAGAGATCCGGCAGCAGAGATGGTCCTGGGCCGGAGGCTTAAGCGGCAACTCCAGCCAGAGTCAGAGCAGATGCTCAATATCAGCGGTCAACCTGCCCAAACATGTGGACTCAGTCATAAACAAGAGGCTCTCCAAATCCTCTGCCACTCTCTGGAACACCCCTAGCAGAACTCGCAGCTTGCAGTTAAGTCCATGGGAGAGCAGCATTGTGGACAGACTGATGACACCCACTCTCTCCTTCTTGGCTCGCAGTCGCAGTGCCGCCAGTGTGCTGAACAACTCCAGAGATGCCCCGTCTGCCAGTCCTCTGTCAGTATGTGCTCATCGGCCTCACCGCTGCTCTGAGCGCTGGAGGGTCACCACCAGCACACCTGATATCACCCAGCGCAGGCGAGACTCCACACCTTTGAGGAAGGATAAGAAGGACAaggagagagaaaatgaaaaggaGAAGAATAGCATCACCAAAGAGAAGGTGCTGAAGAAGAGACAGTCCATGCCTTCAATCAAAACCAGAATAGAGTCCAGTCCGAGTCCAGTGTTTAAACTGAGATCTGCATCTCCTGCTACGCCCAAGGCTCGTGTGTCGTCCCCAAGTCCTGCAGTGTCTCCTAAACCTCCAGCAGCACAAGCAAGCCCC

Function

GO:

id name namespace
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0015630 microtubule cytoskeleton cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-22 Predicted to be involved in microtubule cytoskeleton organization. Predicted to be active in microtubule cytoskeleton. Is expressed in ciliary marginal zone. Orthologous to human MAP7D1 (MAP7 domain containing 1).

Ensembl:

ensembl_id ENSDART00000158442

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021984 lncRNA upstream 172016 35555766 ~ 35556976 (+) True XLOC_010093
TCONS_00021980 lncRNA upstream 812739 34913287 ~ 34916253 (+) False XLOC_010086
TCONS_00021729 lncRNA downstream 27030 35777675 ~ 35780839 (+) True XLOC_010097
TCONS_00021730 lncRNA downstream 64744 35815389 ~ 35817061 (+) True XLOC_010098
TCONS_00020063 lncRNA downstream 167394 35918039 ~ 35927160 (+) False XLOC_010100
TCONS_00021985 lncRNA downstream 282773 36033418 ~ 36038394 (+) True XLOC_010101
TCONS_00021731 lncRNA downstream 461135 36211780 ~ 36218004 (+) True XLOC_010103
TCONS_00020051 mRNA upstream 84225 35593785 ~ 35644767 (+) False XLOC_010094
TCONS_00020050 mRNA upstream 84225 35593785 ~ 35644767 (+) False XLOC_010094
TCONS_00020053 mRNA upstream 84225 35595312 ~ 35644767 (+) True XLOC_010094
TCONS_00020049 mRNA upstream 84241 35593785 ~ 35644751 (+) False XLOC_010094
TCONS_00020058 mRNA downstream 119811 35870456 ~ 35901707 (+) False XLOC_010099
TCONS_00020059 mRNA downstream 137223 35887868 ~ 35896558 (+) False XLOC_010099
TCONS_00020060 mRNA downstream 137322 35887967 ~ 35901707 (+) True XLOC_010099
TCONS_00020061 mRNA downstream 154386 35905031 ~ 35938157 (+) False XLOC_010100
TCONS_00020062 mRNA downstream 165726 35916371 ~ 35933266 (+) False XLOC_010100
TCONS_00020056 other upstream 2860 35726018 ~ 35726132 (+) True XLOC_010096
TCONS_00020045 other upstream 323105 35402061 ~ 35405887 (+) True XLOC_010091
TCONS_00020039 other upstream 448204 35206855 ~ 35280788 (+) True XLOC_010087
TCONS_00020038 other upstream 1004310 34724568 ~ 34724682 (+) True XLOC_010085
TCONS_00020014 other upstream 1972613 33752102 ~ 33756379 (+) False XLOC_010070
TCONS_00020068 other downstream 831841 36582486 ~ 36584785 (+) False XLOC_010109
TCONS_00020072 other downstream 997961 36748606 ~ 36749324 (+) False XLOC_010112
TCONS_00020082 other downstream 2020838 37771483 ~ 37771600 (+) True XLOC_010119
TCONS_00020086 other downstream 2270374 38021019 ~ 38021134 (+) True XLOC_010122
TCONS_00020097 other downstream 2545356 38296001 ~ 38299644 (+) True XLOC_010128

Expression Profile

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