RNA id: TCONS_00020063


Basic Information

Item Value
RNA id TCONS_00020063
length 779
lncRNA type retained_intron
GC content 0.42
exon number 4
gene id XLOC_010100
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 35905031 ~ 35938157 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTTCAAGTGAGTGTGGGACAGAGAAATGTTCCCATGATTAGCCCATTTTTGTGCTCTTAGAGAATGGGAGTCTCCCTTTTGTCAACATTGCTTTTTTAGTAAAACACACTGGCTCAGAAAGCAATTATAGGCCAAGGAAATTCATGCTAGTTTACAAATAGTTTTAAGATGGAGCAGACTGCAGGTCTTAAATCTGTTTTTAACGCCTTGGTCCAATCTGTGAGGATAAAACACAGTTAACTTTAATATATGACAGTTTTTTTCTTCCTGTTACTTGTGCTTATTAAAAGAAATTGACTCAGAGGTTTCCTTTAGAGGAGAGGAACACTAAAAACGGTCACTTGATTCCTCCTGCATGGAAAGACTGCGAGCTTTATCTTTCTCAGAAGGACTAATCTGTATTTTGTTGACCATTTTTGTGAATCAGACTGGGAATGCGGGCCAAGCACCGGTGAGAAGTGGCTCAAAGAAAGATTCAGAAAACCAGATGCCAGTGATGGACCAGAACAGCTCTGATACGAAACCAAAGACGGAGACTAAAATTGACAAACCAGACAATAAAGACTTCCGAAGTGACCCACCTGGTAAAATCAAGTTGCCTGGTCTGCACAAACCACCCGTTCCACCTCCACCAGTGAAGGACAAGGCCATAAAGAAGGATCCAAAAAATGCTGAAGAGCCACAGAAACAACCGCCGCCTCCTTCTCCAGTGCACAAAGAGGTAAAAGACATTAAGGAGGTTAAAGATAAGACCCCTGACCAGTTTGATGGTGTAGAC

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-051120-57 Is expressed in corneal epithelium. Orthologous to human SH3D21 (SH3 domain containing 21).

Ensembl:

ensembl_id ENSDART00000164858

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021730 lncRNA upstream 100978 35815389 ~ 35817061 (+) True XLOC_010098
TCONS_00021729 lncRNA upstream 137200 35777675 ~ 35780839 (+) True XLOC_010097
TCONS_00021984 lncRNA upstream 361063 35555766 ~ 35556976 (+) True XLOC_010093
TCONS_00021982 lncRNA upstream 1001786 34913289 ~ 34916253 (+) False XLOC_010086
TCONS_00021985 lncRNA downstream 106258 36033418 ~ 36038394 (+) True XLOC_010101
TCONS_00021731 lncRNA downstream 284620 36211780 ~ 36218004 (+) True XLOC_010103
TCONS_00021732 lncRNA downstream 311311 36238471 ~ 36296065 (+) False XLOC_010104
TCONS_00021733 lncRNA downstream 312421 36239581 ~ 36337111 (+) False XLOC_010104
TCONS_00021734 lncRNA downstream 343278 36270438 ~ 36339909 (+) True XLOC_010104
TCONS_00020058 mRNA upstream 16332 35870456 ~ 35901707 (+) False XLOC_010099
TCONS_00020060 mRNA upstream 16332 35887967 ~ 35901707 (+) True XLOC_010099
TCONS_00020059 mRNA upstream 21481 35887868 ~ 35896558 (+) False XLOC_010099
TCONS_00020054 mRNA upstream 141965 35661331 ~ 35776074 (+) False XLOC_010095
TCONS_00020055 mRNA upstream 144815 35661771 ~ 35773224 (+) False XLOC_010095
TCONS_00020067 mRNA downstream 199150 36126310 ~ 36163508 (+) False XLOC_010102
TCONS_00020066 mRNA downstream 199150 36126310 ~ 36163508 (+) True XLOC_010102
TCONS_00020069 mRNA downstream 723824 36650984 ~ 36703368 (+) False XLOC_010111
TCONS_00020070 mRNA downstream 743904 36671064 ~ 36719705 (+) True XLOC_010111
TCONS_00020071 mRNA downstream 821378 36748538 ~ 36760156 (+) False XLOC_010112
TCONS_00020056 other upstream 191907 35726018 ~ 35726132 (+) True XLOC_010096
TCONS_00020045 other upstream 512152 35402061 ~ 35405887 (+) True XLOC_010091
TCONS_00020039 other upstream 637251 35206855 ~ 35280788 (+) True XLOC_010087
TCONS_00020038 other upstream 1193357 34724568 ~ 34724682 (+) True XLOC_010085
TCONS_00020014 other upstream 2161660 33752102 ~ 33756379 (+) False XLOC_010070
TCONS_00020068 other downstream 655326 36582486 ~ 36584785 (+) False XLOC_010109
TCONS_00020072 other downstream 821446 36748606 ~ 36749324 (+) False XLOC_010112
TCONS_00020082 other downstream 1844323 37771483 ~ 37771600 (+) True XLOC_010119
TCONS_00020086 other downstream 2093859 38021019 ~ 38021134 (+) True XLOC_010122
TCONS_00020097 other downstream 2368841 38296001 ~ 38299644 (+) True XLOC_010128

Expression Profile

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