RNA id: TCONS_00020067


Basic Information

Item Value
RNA id TCONS_00020067
length 3668
RNA type mRNA
GC content 0.45
exon number 10
gene id XLOC_010102
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 36126310 ~ 36163508 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attcaaattaaaataaaaaagtagaaaaGATGCATTTCAGGATTTGGCtcccatggctggaattgcttaatgcccccaaatcactaaattcGCCCCTCTTTATAGCCTATTAAAAATCACAAATACAGatctaattttttattatttagcctactttttttattaaaacgcaAACAAAAGAGAAATAGAAATAGGAACAGACACAAGGTAAAGGCTACATaagaaaaaagtaataaagtCAGGctagatagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaatgtataaaacATGTAGCCTAGGCTACTCATGTGTCACGACATAGTTCATATCAGCTATTGATTTTTATGACTGATTCAACAGGCATCAGGTTGAGTTGAAAGACAAGTCTCCACTTCCCAGGTCCGTCGATAAAGCTCACTGCTCTTTCTTTAGACTGAAAGCTTCTGTTATTTTCCAAGAATCTGACATGAATTGGCGACAAGTGTTGAGCTGGATCGTGGAGGGGGCGGGACTCGCTTCACCTTGTCTTCGCGGCTCCCATTCGgcacagctgtgtgtgtttgtgtttgtgtgagtgtgtgtgtgcttttgtgtgcGGGGATTCAGACACGCGCGGGGGGCTCCTCGTTTCTCTCTTTAAATGAGGAATCCGATAACAAAATGGATAGCTCAGACAAGGAGAACAGGTCAGATGAAGAATTTGAATCACCCGAGGAAGAGGAGGTGGACCCGAGAATTCAGGGAGAGCTTGAGAAGTTAAATCAGTCTACAGACGACATTAACAGATGTGAAACCGAGCTTGAGGACGCCAGGCAGAAGTTTCGCTCCGTGCTGGTGGAAGCCACATTAAAGCTGGACGAGCTGGTGAAGAAGATTGGCAAAGCGGTGGAGGAATCCAAACCATACTGGGAGGCCCGGCGTGTGGCACGACAGACTCAGCTGGAAGCTCAGAGATCCACACAAGACTTCCAGAGAGCCACGGAGGTGCTGCGGGCGGCCAAAGAGACCATCGCTCTGGCTGAACAGAGGCTGCTGGAGGACGACAAGCGGCAGTTTGACTCGGCCTGGCAGGAGATGCTGAACCACGCAACACAGCGGGTGATGGAGGCTGAGCAAATAAAAACACGCAGCGAGCTACTGCACAAGGAGACCGCCGCCAATTACACCGCTGCCATGAGCCGCATGAAGCAGCAGGAGAAGAAGCTCAAACGCACCATCAACAAGTCAAAgCCCTACTTTGAAATGAAGGCGAAGTATTACTTGCAGCTTGAGCAACTGAAGAAGAATGTGGATGACCTGCAGGCCAAGCTGACGCAAGCTAAAGGGGAATATAAGTCAGCTCTGAGGAAACTGGAGATGATCTCAGATGAGATCCACGAGCGCAGACGTTCTTTGGGCATCGGTCCGCGAGAGAGAGGTGTGGGTGCAGAGGGCGATGGTGTCATCGGTGAAGACTTGTCTGGCTTTAAAATGGAGTCTGATGGAATATCAATGGCTTCCGGGTCATATGAGGATGAAAACTGCAGCACGAGTGCCATGTCTGAGGAAGACTCTGAGACTCAGTCCAACAGCAGCTTCAGTTCAGGGCCCAACAGCCCTGTGGACCTACCCTGTCCTTTCTCCTCATCCTCCTCTTCATCCTCCACCTCCCCAACCCCGTCATCTCGTCCCTGCAGTTTGGACCTGCCCAGCACCGTCTCCTTGTCTGACTTCAGTCTGATGTCTCCAATCCTCGGCCCACGCAGTGAATGCAGCGGCGCCTCGTCCCCCGAGTGTGACTTGGAGAGAGGTGACCGAGCAGAAGGTGCGGAGGCTGTACTGGACAACGTTCTCAATAACAACAGCATCAGCAACGCCAAAACAACCTTCGGCCTGGACAGCCGTTTCCGTCTGCTGTCTCTAAAACTGAGCCGGAACGACAGCAGAAAAACTGTTGTTCGAGACCCCCTGGGTCTGGTTCAACACCCCTCGCCAGCCACAATCCTGCTCGATGGGATGTGACCACAGACACTGATGTATTCATCCACAGTCTGTGCTGTCGAGAGACTCTCCACCTCACTCGTGTGTCATACAGCTCATTTCTCTCACTGTCTACAATGTTCCAGCAACTTTCAGACTGAATTCACGAGTTAAAAAAGCAACCCTCGTGACATGATGTGCTGAAGAGACAAATCTGCCATTTTGGAGGAGCTCAGAGCTGACTTAAGCTTAAGAGGACAAGCATCTCCATAAATGCTAGTAATAGTGTCATCCCCACGTGTTCTAGAAAGTAGGAAGACCcttaaaaggaatagttcacccaaaattgttaatttactcactatttactctctaaccatttatgagtttctttcttctgatgaatacaaaagaagatattttaaagaaagctgaaaacttgtaaccactgacttctatggTAGGAAAATAATACTGTGGAAGTTAAgggttacagttttccagcttccctcaaaatatcgtcttttgtgtttaacagaagaaccTCAGTGATTTGACACATGatgactgtccctttaaagatGTCTATTAAGGAGCACTTGTGTTTTCACTGATAAAACGCATAAGTAGTTCATTATGTAGATTTAATCCACTGGCTGTCGTTGTAACTGTATCGAGGAAAATATGCAGTCATTTGTAAGGCAGTTACGACCGTTTTGAGTTACTGTATATCTAGGGCATGATCTTGTTTCGGCCTGACTCACTTGCTGCATGTCCTTTCATCTTCAAAAAAGGACTTGAAATCTCCTGATGATTCACATTTGTGACTCGTGACGCATCTCTGGACACGTCATTGACATCATTTGGAGACTTGCAGGAGCCAAGTAGATCTAAACTGGTCACCTTCACCTTTCTCCAAAAGAGTGCATGCCACCATTTTCTCTTTCTGTGTAAAGAACAATCATAATTTTCAGTATGGATAGAAAAAATAGCAATACAAAAAGCTGTGTTTACTGTACTCACACTATTCTGAGATGAGGGAGAAGGTGTATTTTTGATGGGTCTCGGTGGGAGATGTGCTGCACTGATGAAGAggacaataactgaatgtttcaTCCAGCATCTGTGGTGCGGGAGCCACTGATTCTGGGACAGATGGCACAGCTTCAGGTCTGGTCAGAAGGCTGTTTATAATGTCTAATGTGTGACCTTGTGTCTCGTCTGTTTTGCCTTCATGAATGttcttttcttgtttgttttgttgttggttTGGTCTGATTGAGAACAGATTGTAAGAAAAGAAACCTTGTAGCAGTGTTTAAATGCTTTATGGTATTTAGGTTTTGTTGTTAACTTGTGTAACTGTTTTCAAACTGAATTAAATAAGAATAACCGAATTATTAGTCAAGTAAGTGTACATTTTTCTGTTAGTTTGCTGTAGGCTGTTATAAAAACAATGTCTCTGTCGATAAATTCATACATATTCCGACATGTTCCTCCGTCTGAGTTCAGACGGGCTCTTTCCTTGACGTTTTGACGTTAATTAACACtattaacataataattaaaAGACCAGACGTCTCGCTATTTCAACTCCGGTTgataatgttgtttgttttttaatgtcaCGACTGAAAT

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0061099 negative regulation of protein tyrosine kinase activity biological_process
GO:0005737 cytoplasm cellular_component
GO:0004860 protein kinase inhibitor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2813 Predicted to enable protein kinase inhibitor activity. Predicted to be involved in intracellular signal transduction and negative regulation of protein tyrosine kinase activity. Predicted to be active in cytoplasm. Is expressed in intermediate cell mass of mesoderm. Orthologous to human SH3BP5 (SH3 domain binding protein 5).

Ensembl:

ensembl_id ENSDART00000189802

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021985 lncRNA upstream 87916 36033418 ~ 36038394 (+) True XLOC_010101
TCONS_00020063 lncRNA upstream 199150 35918039 ~ 35927160 (+) False XLOC_010100
TCONS_00021730 lncRNA upstream 309249 35815389 ~ 35817061 (+) True XLOC_010098
TCONS_00021729 lncRNA upstream 345471 35777675 ~ 35780839 (+) True XLOC_010097
TCONS_00021984 lncRNA upstream 569334 35555766 ~ 35556976 (+) True XLOC_010093
TCONS_00021731 lncRNA downstream 48272 36211780 ~ 36218004 (+) True XLOC_010103
TCONS_00021732 lncRNA downstream 74963 36238471 ~ 36296065 (+) False XLOC_010104
TCONS_00021733 lncRNA downstream 76073 36239581 ~ 36337111 (+) False XLOC_010104
TCONS_00021734 lncRNA downstream 106930 36270438 ~ 36339909 (+) True XLOC_010104
TCONS_00021735 lncRNA downstream 118752 36282260 ~ 36285155 (+) False XLOC_010105
TCONS_00020061 mRNA upstream 188153 35905031 ~ 35938157 (+) False XLOC_010100
TCONS_00020064 mRNA upstream 188601 35918463 ~ 35937709 (+) False XLOC_010100
TCONS_00020065 mRNA upstream 193032 35924188 ~ 35933278 (+) True XLOC_010100
TCONS_00020062 mRNA upstream 193044 35916371 ~ 35933266 (+) False XLOC_010100
TCONS_00020058 mRNA upstream 224603 35870456 ~ 35901707 (+) False XLOC_010099
TCONS_00020069 mRNA downstream 487476 36650984 ~ 36703368 (+) False XLOC_010111
TCONS_00020070 mRNA downstream 507556 36671064 ~ 36719705 (+) True XLOC_010111
TCONS_00020071 mRNA downstream 585030 36748538 ~ 36760156 (+) False XLOC_010112
TCONS_00020075 mRNA downstream 605166 36768674 ~ 36931731 (+) False XLOC_010113
TCONS_00020074 mRNA downstream 605166 36768674 ~ 36931731 (+) False XLOC_010113
TCONS_00020056 other upstream 400178 35726018 ~ 35726132 (+) True XLOC_010096
TCONS_00020045 other upstream 720423 35402061 ~ 35405887 (+) True XLOC_010091
TCONS_00020039 other upstream 845522 35206855 ~ 35280788 (+) True XLOC_010087
TCONS_00020038 other upstream 1401628 34724568 ~ 34724682 (+) True XLOC_010085
TCONS_00020014 other upstream 2369931 33752102 ~ 33756379 (+) False XLOC_010070
TCONS_00020068 other downstream 418978 36582486 ~ 36584785 (+) False XLOC_010109
TCONS_00020072 other downstream 585098 36748606 ~ 36749324 (+) False XLOC_010112
TCONS_00020082 other downstream 1607975 37771483 ~ 37771600 (+) True XLOC_010119
TCONS_00020086 other downstream 1857511 38021019 ~ 38021134 (+) True XLOC_010122
TCONS_00020097 other downstream 2132493 38296001 ~ 38299644 (+) True XLOC_010128

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_02679833_02695963.mRNA True 2846 mRNA 0.46 12 CI01000016 2678538 ~ 2695963 (-)
bowfin (Amia calva) AMCG00002506 True 3370 mRNA 0.49 8 CM030136.1 17107399 ~ 17136520 (+)