RNA id: TCONS_00021733


Basic Information

Item Value
RNA id TCONS_00021733
length 3476
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id XLOC_010104
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 36238471 ~ 36339909 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTGCAGAGAATTTCTGATGAGGATTTTAGAAAAGCAGAAGAGTTTGTCAAAATTACAAAGATACTTTACACTTCAACCCTCTGCGTCTCTGCTGAAAGGAGCCAAAACTTGGGTCAGATTCTGCCTATCTTAAGTAAGCTCCAGCACCACTTCACAGTGAATAAAGAGGACTCCTCCTTCACAAAGACCATCAAGGACACTATCTGGAATGACCTCTCAAAAAGATACCAGGGATGGAGGAGGGCACAGCCTTGCATCCCAGATTCAAGTCAAAAGTGACAAATGAAGTGTGGACCAGACTGAAGGAGGAGCTAATGAAAAGGACCTTAGAACAGGTGTTACTTCATATTGTAGGAGGAAGAGGAGTGAAGAGGAAAGCGGAGGatgattttcacagtattttaggTGAAGGCAAACCATACGCTTTGCGGAAACGCATCAGAGTTGCAGAGCTGGAGAACACAAGAGACACAGAGATGAGCAGCTATCAAGAGAAAACCAGCTCAGGAGGAAGAGGAGTGAAGCGGAAAGCGGATGATGATTTTCACAGTGTTTTAGGTGAAGGTAAACCTTATGCACTGCGCAAACGCATCAAAGTTGCTGAGCTGGAGAACACAAGAGTGGACGCCGACACAGAGGCGTCCAGCTCAGGTCAGTCCACTCTTTATGActggagaaatactggaaaactgGAGCACTGCTGCCATTCGTTAAATCCCAGAGTAAAATAAATGCCAATTAATGAAATAATcgattattaataattcattattgaCTGTAATCCACATCAGGAGGAAGAGGAGTGAAGAGGAAAGCGGATGATGATTTTCACAGTGTTTTACACACAGTTTTACTCACAgtagtctacaggtgtccagggacaggctctacaatggtttaagtcatacttaactgaccgctaccagtttgtgaatctaaatggacagccttcacaaatctgcccagtaaagtatggggtgcctcaaggatcagttttaggccctttactgtttacaatttacatgctacctctgggagacattattagaagacatgggatcagctttcactgctaaatatgcagatgatactcaattatatatttcaactaaacctgacgagacgtctgaactttctaaactaactgagtgtatcaaagacatcaaagactggatgaccaacaattttcttctcttaaactccgacaaaacagaattatcacttattgggcctaaatcttgcacacagcagatctcgcaactcaatttacaattagagggatacaaagttagctttagctctactataaaagatttgggtgtcatattagacagcaatctaacttttaaaaaccatatatcccatgtcacaaaaactgccttctttcatctgagaaatatcactaaattacgaaatatgctatccatctcagatgcagaaaagctagtccatgcttttatgacttcgtgactggattactgtaatgctctatttgctggctgcccagcatcctctattaacaaacttcaattagtacaaaatgcagcagccagagttctgaccaggtctagaaaatatgatcatatcaccccaattttatcctccttacactggctgcctgttaagtttcgtattgaatttaaaatattacttctcacctataaagctctaaataatctagctcctgtttatctaaccaaccttctgtctcgctacgaaccaactcgctctttaagatctcaaaattcagggcttctggtagtacctagaatagcaaaatcaagtaaaggaggtcgagccttctctttcatggctcctacactctggaatagccttcctgataacgtccgaggctcagacacactctcccagttcaaaactagattaaagacctatctgtttagtaaagcatacactcaatgcatcacctagcgggttccacactggcttctgcatcttgcttaaatacactatgaacagcagctacgctaattattctctttattctctattttcacctggggatactcatcccgaggtcctcagattaggcggagtcactgattggatccaagaccagcgacgtgatgatcccaaggattccatatccgggaccaggccatatcctgagctgctgctgcgctgatggtcgtggggagtggagaacatgtgtctgattccagcgacgctccaggaacagacgagtcttcattgaggccatcttccagcataaaccacggcgaatgaagttctgcacaagacttttgtccagcggagaaattaaaatggtcgtgcccaactgagtctggttctctcaaggttttttttcttcactcccatcaggtgaagttttttttccctctccgctgtcgccactgcctcgcatggttcaggattggtagagctacgcatcgatgaatttgctcttcagtgttgaactctcagtaatgattaaatcacactgaactgagctaaactgaactgaactgaacttatacactaaaacctgaaccacactgttccagttactgaaccacactgttccagttactatgaccatttatgtgaagctgctttgacacaatctacattgtaaaagcgctatacaaataaagctgaattgaattgaattggcaGAAATACACGGTATGTGTGAAAATTATCGACTTTTATTTGTGccaaaaaatcattcaaataggGCGACGCGGTGGTGCTGTGGGTAGCATGTTCTCCTCACAgatagaaggtcgctggtttgaacctcggctgggtcagttggtgtttctgtgtggagtttgcatgttctccccatgttggcatgggttcccccacagtccaaactattttctacaatgtagattgtgtcaaagcagcttaacatagaagttgtagtaaattgaaactgtgtcagtccagttttcagagttgaaaacAAACGTGAAAAAGCTTCATTACtggcataaaaaataaatgattcttAAGATTAGGagtgtattgttcattgtgtTGTCATCCACATTAGGAGGAAGAGGAGTGAAGCGGAAAGCAGATGATGCTTTTCAGAGTGTTTCTGGTGGAGGTAAACCATCTGCCCACCGGAAACGCATCAGAGTTGCTGAGCTGGAGAACACAAGTGTAGACGCCGACACAGAGGCGTCCAGCTCAGGTCAGTCCACTCTTAAATGACTGGAAAACTGGAGCACTGCTGCCATTTGTTAAATCCCAGAGTAAAATAAATGGCAATATTGAAATAATcgattattaataattcattattgaCTGTAATCCACATCAGGAGGAAGAGGAGTGAAGAGGAAAGCGGATGATGATTTGCAGAGTGATTCTGATGGAGTCAAACCATACGCTCTGCGGAAACGCATCAAAGCTGCAGAGACGTCCAGCGATGAGAACAGCCGCTCAGGTCAGTCTCCCGTTACTCTTCTACAGTTGTATGAGCATATATATGTCAGCTTAA

Function

GO:

id name namespace
GO:0090085 regulation of protein deubiquitination biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021731 lncRNA upstream 21577 36211780 ~ 36218004 (+) True XLOC_010103
TCONS_00021985 lncRNA upstream 201187 36033418 ~ 36038394 (+) True XLOC_010101
TCONS_00020063 lncRNA upstream 312421 35918039 ~ 35927160 (+) False XLOC_010100
TCONS_00021730 lncRNA upstream 422520 35815389 ~ 35817061 (+) True XLOC_010098
TCONS_00021729 lncRNA upstream 458742 35777675 ~ 35780839 (+) True XLOC_010097
TCONS_00021737 lncRNA downstream 8872 36345983 ~ 36348575 (+) True XLOC_010106
TCONS_00021987 lncRNA downstream 210916 36548027 ~ 36557880 (+) False XLOC_010107
TCONS_00021986 lncRNA downstream 210916 36548027 ~ 36557880 (+) False XLOC_010107
TCONS_00021988 lncRNA downstream 210930 36548041 ~ 36557880 (+) True XLOC_010107
TCONS_00021989 lncRNA downstream 223581 36560692 ~ 36591341 (+) True XLOC_010108
TCONS_00020067 mRNA upstream 76073 36126310 ~ 36163508 (+) False XLOC_010102
TCONS_00020066 mRNA upstream 76073 36126310 ~ 36163508 (+) True XLOC_010102
TCONS_00020064 mRNA upstream 301872 35918463 ~ 35937709 (+) False XLOC_010100
TCONS_00020065 mRNA upstream 306303 35924188 ~ 35933278 (+) True XLOC_010100
TCONS_00020062 mRNA upstream 306315 35916371 ~ 35933266 (+) False XLOC_010100
TCONS_00020069 mRNA downstream 313873 36650984 ~ 36703368 (+) False XLOC_010111
TCONS_00020070 mRNA downstream 333953 36671064 ~ 36719705 (+) True XLOC_010111
TCONS_00020071 mRNA downstream 411427 36748538 ~ 36760156 (+) False XLOC_010112
TCONS_00020075 mRNA downstream 431563 36768674 ~ 36931731 (+) False XLOC_010113
TCONS_00020074 mRNA downstream 431563 36768674 ~ 36931731 (+) False XLOC_010113
TCONS_00020056 other upstream 513449 35726018 ~ 35726132 (+) True XLOC_010096
TCONS_00020045 other upstream 833694 35402061 ~ 35405887 (+) True XLOC_010091
TCONS_00020039 other upstream 958793 35206855 ~ 35280788 (+) True XLOC_010087
TCONS_00020038 other upstream 1514899 34724568 ~ 34724682 (+) True XLOC_010085
TCONS_00020014 other upstream 2483202 33752102 ~ 33756379 (+) False XLOC_010070
TCONS_00020068 other downstream 245375 36582486 ~ 36584785 (+) False XLOC_010109
TCONS_00020072 other downstream 411495 36748606 ~ 36749324 (+) False XLOC_010112
TCONS_00020082 other downstream 1434372 37771483 ~ 37771600 (+) True XLOC_010119
TCONS_00020086 other downstream 1683908 38021019 ~ 38021134 (+) True XLOC_010122
TCONS_00020097 other downstream 1958890 38296001 ~ 38299644 (+) True XLOC_010128

Expression Profile

//