RNA id: TCONS_00021987


Basic Information

Item Value
RNA id TCONS_00021987
length 2172
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id XLOC_010107
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 36548027 ~ 36557880 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAGaaatttattacttattaattgtAGCTCTTTCATTTCTTTCTATGAATGTAGCTGTGTTATGCCAATGTATGTTATATAGTTGTGTCATGTTTATGTATGTAATTTAGCTGTGTCATGTTCATGTATGTACGTCAAGAGGGGCCAGGGTCTGTGGTGCCAAGGCCAGATAATACAGAACGTAAAGGACCACACCCGGCCAATTCCTAGAACACCAGTTGTTTACACATGTATATAAAAGTGGTTGGAAGGAAAGAGTTGTTGTTGAAGATGGCCTGAACATACGTGAGGGACACCTCCAACCCGGAGCTCTGTATCTATTGAATTATTCAATTGTATTCATTAAATGGCTAATACTTTTGCATTGAAGAAAACCTCTCCTGACTCTCATTGAACACGCAGGGAAATGGTTAATGACATCAAAAAACTCCAACAATTGGTGACCTCCGACGTGGAGTGGGAGAGAACATTGATCTGTCGTGTTGCATTGACATCAAGGCATGCCAAAGCATAAGGTCATCAGTATCCAGAACCAGGAGCAGCCTTGACGTGCACTGACAGTGCACCGCTGATGAACAAGCCATATTATGACAAATTAACAGCTTTACTCTCAGATTTTTCTGAACAGATTTTTGTGAAATGCCTGGAGGGGGCCTAAGAAAAAGTGGTCCCTACATCTGAATAGGTGTTGCTGAAGGTATTCAAGTGAAAGTGGGAGGAGCCAAGATTCACCAAACTGGCAGCTGAGGAGTACAAATGGCGGCCATGAGTAAAATCAAGGCCGAGAGGGGGAGTGCGTAGCAAAgaacaacataaacaaatgattgACCCGCTGCCCTCATGCCAAGAGGGGACGTCTGACTAAATAGGGAGTGCAAGCATGTattagggtaggagctaaacaCGCAGTAACCTCAATACATGGGAGCAACCTGATAGTAGTGCAGGCCTACGGATGACAACGAGGAAGTGTGCTATCACAAAAGAGGGACAAAGAACAGTGTTCTGTTTGATCACTAAAGAAATAGTCACTGATTTACCAACAGATGACAATTTGACCAGAACGTTTGAGGTTTTGATTTTCATGTTAATCAATGTCTTGATTCTAACCATAatgctacagtttttaatttcattgttaAAAGTTTGGACCTTAGATCTCAATGATATAATGGTACTTTTGAATTTTTCATTGGAGCATATTTTTTACGGGTTTGGATTCCCTTTTTGATTGTAATCAAATTTCTAAAGTTTgaaaattttaatttgaattatattgataactaataataactgaataatataaataaataatcataccTCTTATGATAAAGTGCAGAAGGTAGGAAAATGAAATTGTGAAATAATTGGAAGTTAATGGAAGTGTTTGGCAAAACAAGCCTGAATATAGTGGGCATAATTTTTATGATAAGAAATGATTAGAATGAAGCCATGGAGTAGAGAGACTCCACCACTCAAGAAGAGAACTAGGGGTGAACAGATTGTTGAGTGAATCCAACAGATAGGGAATTGAGTTAAAAGGGTTTATGGGCATTTTCTAATATAATGAAAGAGTACAATGTAAACAACAAGGTGTAAGCAACCATTTTGGAAAAATGGGTAAAGGATTGTATTCGgcaaatatttgtaataatgttaattgatttttattttttttctttacgttTAGATTTTGGTTATCTGTGGTTGTGAGCTCCTTTAGAGGAGCTCAAAAGAGGGATTTTGTAATTTTGGaaatttattacttattaattgtAGCTCTTTCATTTCTTTCTATGAATGTAGCTGTGTTATGCCAATGTATGTTATATAGTTGTGTCATGTTTATGTATGTAATTTAGCTGTGTCATGTTCATGTATGTACGTCAAGAGGGGCCAGGGTCTGTGGTGCCAAGGCCAGATAATACAGAACGTAAAGGACCACACCCAGCCAATTCCTAGAACACCAGTTGTTTACACATGTATATAAAAGTGGTTGGAAGGAAAGAGTTGTTGTTGAAGATGGCCTGAACATACGTGAGGGACACCTCCAACCCGGAGCTCTGTATCTATTGAATTATTCAATTGTATTCATTAAATGGCTAATACTTTTGCATTGAAGAAAACCTCTCCTGACTCTCATTGAACACGCAGGGAAATGGTTAATGACAT

Function

GO:

id name namespace
GO:0030182 neuron differentiation biological_process
GO:0009449 gamma-aminobutyric acid biosynthetic process biological_process
GO:0048666 neuron development biological_process
GO:0007399 nervous system development biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0042995 cell projection cellular_component
GO:0043005 neuron projection cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0005882 intermediate filament cellular_component
GO:0045202 synapse cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0099513 polymeric cytoskeletal fiber cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0008427 calcium-dependent protein kinase inhibitor activity molecular_function
GO:0004351 glutamate decarboxylase activity molecular_function
GO:0010858 calcium-dependent protein kinase regulator activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021736 lncRNA upstream 190925 36282260 ~ 36357102 (+) True XLOC_010105
TCONS_00021737 lncRNA upstream 199452 36345983 ~ 36348575 (+) True XLOC_010106
TCONS_00021734 lncRNA upstream 208118 36270438 ~ 36339909 (+) True XLOC_010104
TCONS_00021733 lncRNA upstream 210916 36239581 ~ 36337111 (+) False XLOC_010104
TCONS_00021732 lncRNA upstream 251962 36238471 ~ 36296065 (+) False XLOC_010104
TCONS_00021989 lncRNA downstream 2812 36560692 ~ 36591341 (+) True XLOC_010108
TCONS_00021990 lncRNA downstream 21120 36579000 ~ 36613851 (+) False XLOC_010109
TCONS_00021991 lncRNA downstream 21125 36579005 ~ 36584785 (+) False XLOC_010109
TCONS_00021992 lncRNA downstream 48162 36606042 ~ 36608974 (+) True XLOC_010110
TCONS_00021993 lncRNA downstream 53364 36611244 ~ 36613851 (+) True XLOC_010109
TCONS_00020067 mRNA upstream 384519 36126310 ~ 36163508 (+) False XLOC_010102
TCONS_00020066 mRNA upstream 384519 36126310 ~ 36163508 (+) True XLOC_010102
TCONS_00020064 mRNA upstream 610318 35918463 ~ 35937709 (+) False XLOC_010100
TCONS_00020065 mRNA upstream 614749 35924188 ~ 35933278 (+) True XLOC_010100
TCONS_00020062 mRNA upstream 614761 35916371 ~ 35933266 (+) False XLOC_010100
TCONS_00020069 mRNA downstream 93104 36650984 ~ 36703368 (+) False XLOC_010111
TCONS_00020070 mRNA downstream 113184 36671064 ~ 36719705 (+) True XLOC_010111
TCONS_00020071 mRNA downstream 190658 36748538 ~ 36760156 (+) False XLOC_010112
TCONS_00020075 mRNA downstream 210794 36768674 ~ 36931731 (+) False XLOC_010113
TCONS_00020074 mRNA downstream 210794 36768674 ~ 36931731 (+) False XLOC_010113
TCONS_00020056 other upstream 821895 35726018 ~ 35726132 (+) True XLOC_010096
TCONS_00020045 other upstream 1142140 35402061 ~ 35405887 (+) True XLOC_010091
TCONS_00020039 other upstream 1267239 35206855 ~ 35280788 (+) True XLOC_010087
TCONS_00020038 other upstream 1823345 34724568 ~ 34724682 (+) True XLOC_010085
TCONS_00020014 other upstream 2791648 33752102 ~ 33756379 (+) False XLOC_010070
TCONS_00020068 other downstream 24606 36582486 ~ 36584785 (+) False XLOC_010109
TCONS_00020072 other downstream 190726 36748606 ~ 36749324 (+) False XLOC_010112
TCONS_00020082 other downstream 1213603 37771483 ~ 37771600 (+) True XLOC_010119
TCONS_00020086 other downstream 1463139 38021019 ~ 38021134 (+) True XLOC_010122
TCONS_00020097 other downstream 1738121 38296001 ~ 38299644 (+) True XLOC_010128

Expression Profile

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