RNA id: TCONS_00021989


Basic Information

Item Value
RNA id TCONS_00021989
length 574
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id XLOC_010108
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 36560692 ~ 36591341 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cgaagggttactttagtaacctcgaacgttacctGCAAGCTCATCCAACTTATTCCCTAAGGACCGAACATTTCCCATGATCACGGAGGGGAGCGGGGTGCGAGTCACCTGTTGTTTTCTTAAGCGTTGCCTAACGCCCCCTCGCTTACCTCGCTTCCTCATCTTGGCCTTCGGCTTTGTTTCCCGCGTTCCATCGGACACTTTCCGTACCACATTTGGTAAATAAATGTCTGAAATTGTCTCTACCCTTAAAGGGTTTAATTGCAACAGCGTGCTCCTGGTATACTGTATCCTTCCATGATTAACAACTCCGTGAGCATATTCACCAGCAAGCAGAAGATAAACCGGTTCCCATAACAACGTGAGAAATAAAATCTCCATTGTAGATAGATTGCACACGAATATATTAAAATACTATCCCATAAACAATTAAAAAGAGAAGAGCGGACACATAAAGTCTAAATTGTTAAAAACAaagtgttaaaaaacaaaacacaagcacTAGTCCCATGCCAAACTCTCACTGCTGGTCGGTGCGTGCGCATGCGCCCTTCCGTTGTATGTAAAGCTCCAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021987 lncRNA upstream 2812 36548027 ~ 36557880 (+) False XLOC_010107
TCONS_00021986 lncRNA upstream 2812 36548027 ~ 36557880 (+) False XLOC_010107
TCONS_00021988 lncRNA upstream 2812 36548041 ~ 36557880 (+) True XLOC_010107
TCONS_00021736 lncRNA upstream 203590 36282260 ~ 36357102 (+) True XLOC_010105
TCONS_00021737 lncRNA upstream 212117 36345983 ~ 36348575 (+) True XLOC_010106
TCONS_00021992 lncRNA downstream 14701 36606042 ~ 36608974 (+) True XLOC_010110
TCONS_00021993 lncRNA downstream 19903 36611244 ~ 36613851 (+) True XLOC_010109
TCONS_00020073 lncRNA downstream 167789 36759130 ~ 36760076 (+) True XLOC_010112
TCONS_00021994 lncRNA downstream 177363 36768704 ~ 36789683 (+) False XLOC_010113
TCONS_00021995 lncRNA downstream 363747 36955088 ~ 36958828 (+) True XLOC_010114
TCONS_00020067 mRNA upstream 397184 36126310 ~ 36163508 (+) False XLOC_010102
TCONS_00020066 mRNA upstream 397184 36126310 ~ 36163508 (+) True XLOC_010102
TCONS_00020064 mRNA upstream 622983 35918463 ~ 35937709 (+) False XLOC_010100
TCONS_00020065 mRNA upstream 627414 35924188 ~ 35933278 (+) True XLOC_010100
TCONS_00020062 mRNA upstream 627426 35916371 ~ 35933266 (+) False XLOC_010100
TCONS_00020069 mRNA downstream 59643 36650984 ~ 36703368 (+) False XLOC_010111
TCONS_00020070 mRNA downstream 79723 36671064 ~ 36719705 (+) True XLOC_010111
TCONS_00020071 mRNA downstream 157197 36748538 ~ 36760156 (+) False XLOC_010112
TCONS_00020075 mRNA downstream 177333 36768674 ~ 36931731 (+) False XLOC_010113
TCONS_00020074 mRNA downstream 177333 36768674 ~ 36931731 (+) False XLOC_010113
TCONS_00020056 other upstream 834560 35726018 ~ 35726132 (+) True XLOC_010096
TCONS_00020045 other upstream 1154805 35402061 ~ 35405887 (+) True XLOC_010091
TCONS_00020039 other upstream 1279904 35206855 ~ 35280788 (+) True XLOC_010087
TCONS_00020038 other upstream 1836010 34724568 ~ 34724682 (+) True XLOC_010085
TCONS_00020014 other upstream 2804313 33752102 ~ 33756379 (+) False XLOC_010070
TCONS_00020072 other downstream 157265 36748606 ~ 36749324 (+) False XLOC_010112
TCONS_00020082 other downstream 1180142 37771483 ~ 37771600 (+) True XLOC_010119
TCONS_00020086 other downstream 1429678 38021019 ~ 38021134 (+) True XLOC_010122
TCONS_00020097 other downstream 1704660 38296001 ~ 38299644 (+) True XLOC_010128
TCONS_00020102 other downstream 1759382 38350723 ~ 38352278 (+) False XLOC_010130

Expression Profile

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